Genome: Syntrophothermus lipocalidus DSM 12680 (NC_014220.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 76157-76194 (-)glycine73092-73455 (+)Slip_0070

Slip_0070Operon

DOOR ID: 713040		Slip_0069,
Slip_0070		 View Structure
2 242522-242620 (+)TPP242689-244183 (+)Slip_0243

Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)		Slip_0243Operon

DOOR ID: 713077		Slip_0243,
Slip_0244		 View Structure
3 259266-259471 (+)cobalamin259737-260865 (+)Slip_0260

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		Slip_0260Single gene

DOOR ID: 2873185		Slip_0260 View Structure
4 324635-324868 (+)cobalamin325564-326452 (+)Slip_0317

Uncharacterized protein involved in pigment biosynthesis		Slip_0317Operon

DOOR ID: 713092		Slip_0317,
Slip_0318,
Slip_0319		 View Structure
5 334307-334544 (+)cobalamin334748-337535 (+)Slip_0327

Ig domain protein group 2 domain protein		Slip_0327Operon

DOOR ID: 713095		Slip_0327,
Slip_0328,
Slip_0329,
Slip_0330,
Slip_0331,
Slip_0332		 View Structure
6 476998-477073 (+)fluoride477157-478879 (+)Slip_0474

Dynamin family protein		Slip_0474Single gene

DOOR ID: 2873239		Slip_0474 View Structure
7 582141-582265 (+)MOCO582309-582486 (+)Slip_0565

Slip_0565Single gene

DOOR ID: 2873274		Slip_0565 View Structure
8 621404-621502 (+)ykkC-yxkD621624-622140 (+)Slip_0596

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		Slip_0596Operon

DOOR ID: 713154		Slip_0596,
Slip_0597,
Slip_0598,
Slip_0599,
Slip_0600,
Slip_0601,
Slip_0602,
Slip_0603,
Slip_0604,
Slip_0605,
Slip_0606,
Slip_0607,
Slip_0608,
Slip_0609,
Slip_0610,
Slip_0611,
Slip_0612,
Slip_0613,
Slip_0614,
Slip_0615,
Slip_0616,
Slip_0617		 View Structure
9 760912-761020 (+)SAM761072-763631 (+)Slip_0734

Homocysteine S-methyltransferase		Slip_0734Operon

DOOR ID: 713178		Slip_0734,
Slip_0735,
Slip_0736		 View Structure
10 903292-903422 (+)FMN903543-904638 (+)Slip_0869

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Slip_0869Operon

DOOR ID: 713209		Slip_0869,
Slip_0870,
Slip_0871,
Slip_0872,
Slip_0873		 View Structure
11 967725-967908 (-)cobalamin966232-967708 (-)Slip_0934

Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)		Slip_0934Operon

DOOR ID: 713221		Slip_0933,
Slip_0934		 View Structure
12 1229300-1229385 (-)c-di-GMP-I1228296-1229049 (-)Slip_1187

Prepilin peptidase		Slip_1187single gene

DOOR ID: 2873446		Slip_1187 View Structure
13 1301443-1301529 (-)c-di-GMP-I1300455-1301349 (-)Slip_1262

Transglutaminase domain protein		Slip_1262single gene

DOOR ID: 2873476		Slip_1262 View Structure
14 1495598-1495791 (-)ydaO-yuaA1493968-1495222 (-)Slip_1437

Lysine 2;3-aminomutase YodO family protein 		Slip_1437Operon

DOOR ID: 713324		Slip_1435,
Slip_1436,
Slip_1437		 View Structure
15 1519183-1519477 (-)cobalamin1518403-1518973 (-)Slip_1461

Slip_1461Single gene

DOOR ID: 2873531		Slip_1461 View Structure
16 1521235-1521346 (+)TPP1521398-1522202 (+)Slip_1464

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		Slip_1464Operon

DOOR ID: 713331		Slip_1464,
Slip_1465		 View Structure
17 1831802-1831920 (-)MOCO1830827-1831670 (-)Slip_1758

Extracellular solute-binding protein family 1		Slip_1758Single gene

DOOR ID: 2873619		Slip_1758 View Structure
18 2053041-2053109 (-)fluoride2051243-2052977 (-)Slip_2005

Dynamin family protein		Slip_2005Single gene

DOOR ID: 2873687		Slip_2005 View Structure
19 2172719-2172961 (-)glmS2170801-2172622 (-)Slip_2135

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Slip_2135Single gene

DOOR ID: 2873716		Slip_2135 View Structure