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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
40466-40511
(+)
PreQ1
40518-40926 (+)
Bsel_0027
NADPH-dependent 7-cyano-7-deazaguanine reductase (3) (7-cyano-7-carbaguanine reductase) (NADPH-dependent nitrile oxidoreductase) (PreQ(0) reductase)
Bsel_0027
Operon
DOOR ID:
712352
Bsel_0027,
Bsel_0028,
Bsel_0029,
Bsel_0030
View Structure
2
186146-186311
(-)
ykoK
184555-185917 (-)
Bsel_0173
Magnesium transporter MgtE
Bsel_0173
Single gene
DOOR ID:
2871991
Bsel_0173
View Structure
3
320456-320635
(-)
cobalamin
318093-320301 (-)
Bsel_0306
Ribonucleoside-diphosphate reductase
Bsel_0306
Operon
DOOR ID:
712404
Bsel_0301,
Bsel_0302,
Bsel_0303,
Bsel_0304,
Bsel_0305,
Bsel_0306
View Structure
4
345889-346039
(-)
MOCO
345052-345835 (-)
Bsel_0333
Molybdenum ABC transporter; periplasmic molybdate-binding protein
Bsel_0333
Operon
DOOR ID:
712414
Bsel_0331,
Bsel_0332,
Bsel_0333
View Structure
5
393576-393737
(+)
glmS
393867-395673 (+)
Bsel_0378
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Bsel_0378
Single gene
DOOR ID:
2872060
Bsel_0378
View Structure
6
400400-400499
(-)
ykkC-yxkD
399483-400329 (-)
Bsel_0383
Bsel_0383
Single gene
DOOR ID:
2872063
Bsel_0383
View Structure
7
508413-508522
(+)
SAM
508599-509721 (+)
Bsel_0483
Cystathionine gamma-synthase (8)
Bsel_0483
Operon
DOOR ID:
712446
Bsel_0483,
Bsel_0484
View Structure
8
527676-527842
(-)
ykoK
526034-527399 (-)
Bsel_0495
Magnesium transporter MgtE
Bsel_0495
Operon
DOOR ID:
712448
Bsel_0494,
Bsel_0495
View Structure
9
652937-653016
(+)
c-di-GMP-II
653335-663157 (+)
Bsel_0606
LPXTG-motif cell wall anchor domain protein
Bsel_0606
Operon
DOOR ID:
712473
Bsel_0606,
Bsel_0607
View Structure
10
747376-747477
(+)
purine
747613-749152 (+)
Bsel_0678
GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
Bsel_0678
Single gene
DOOR ID:
2872155
Bsel_0678
View Structure
11
749234-749335
(+)
purine
749490-750804 (+)
Bsel_0679
Xanthine/uracil/vitamin C permease
Bsel_0679
Single gene
DOOR ID:
2872156
Bsel_0679
View Structure
12
758039-758140
(+)
purine
758321-758807 (+)
Bsel_0688
N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)
Bsel_0688
Operon
DOOR ID:
712493
Bsel_0688,
Bsel_0689,
Bsel_0690,
Bsel_0691,
Bsel_0692,
Bsel_0693,
Bsel_0694,
Bsel_0695,
Bsel_0696,
Bsel_0697,
Bsel_0698,
Bsel_0699
View Structure
13
807943-808025
(+)
c-di-GMP-I
808138-810217 (+)
Bsel_0736
Methyl-accepting chemotaxis sensory transducer
Bsel_0736
single gene
DOOR ID:
2872170
Bsel_0736
View Structure
14
1209134-1209236
(-)
TPP
1208227-1209037 (-)
Bsel_1044
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Bsel_1044
Operon
DOOR ID:
712560
Bsel_1042,
Bsel_1043,
Bsel_1044
View Structure
15
1324400-1324509
(+)
SAM
1324706-1325732 (+)
Bsel_1147
Methionine import ATP-binding protein MetN
Bsel_1147
Operon
DOOR ID:
712579
Bsel_1147,
Bsel_1148,
Bsel_1149
View Structure
16
1341998-1342177
(+)
lysine
1342310-1343876 (+)
Bsel_1164
Na+/H+ antiporter NhaC-like protein
Bsel_1164
Single gene
DOOR ID:
2872339
Bsel_1164
View Structure
17
1394804-1394924
(+)
SAM
1394981-1396580 (+)
Bsel_1212
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Bsel_1212
Operon
DOOR ID:
712591
Bsel_1212,
Bsel_1213
View Structure
18
1414582-1414692
(+)
SAM
1414833-1416048 (+)
Bsel_1229
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Bsel_1229
Single gene
DOOR ID:
2872372
Bsel_1229
View Structure
19
1643284-1643367
(+)
c-di-GMP-II
1643451-1643934 (+)
Bsel_1442
Bsel_1442
Operon
DOOR ID:
712640
Bsel_1442,
Bsel_1443
View Structure
20
1897880-1897984
(+)
TPP
1898063-1898630 (+)
Bsel_1698
Proton-coupled thiamine transporter YuaJ
Bsel_1698
Operon
DOOR ID:
712688
Bsel_1698,
Bsel_1699
View Structure
21
2058946-2059028
(+)
c-di-GMP-I
2059109-2061437 (+)
Bsel_1856
Diguanylate cyclase/phosphodiesterase
Bsel_1856
single gene
DOOR ID:
2872573
Bsel_1856
View Structure
22
2151927-2152002
(+)
glycine
2152139-2152415 (+)
Bsel_1943
Bsel_1943
Single gene
DOOR ID:
2872606
Bsel_1943
View Structure
23
2207460-2207643
(+)
lysine
2207750-2208638 (+)
Bsel_1988
4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase)
Bsel_1988
Single gene
DOOR ID:
2872623
Bsel_1988
View Structure
24
2414027-2414177
(-)
FMN
2412728-2413814 (-)
Bsel_2190
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Bsel_2190
Operon
DOOR ID:
712793
Bsel_2187,
Bsel_2188,
Bsel_2189,
Bsel_2190
View Structure
25
2417835-2418011
(-)
lysine
2416362-2417697 (-)
Bsel_2195
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
Bsel_2195
Single gene
DOOR ID:
2872692
Bsel_2195
View Structure
26
2513186-2513282
(-)
glycine
2511882-2512977 (-)
Bsel_2287
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bsel_2287
Operon
DOOR ID:
712813
Bsel_2285,
Bsel_2286,
Bsel_2287
View Structure
27
2822997-2823104
(-)
TPP
2822200-2822878 (-)
Bsel_2597
Aminopyrimidine aminohydrolase
Bsel_2597
Operon
DOOR ID:
712881
Bsel_2593,
Bsel_2594,
Bsel_2595,
Bsel_2596,
Bsel_2597
View Structure
28
2823227-2823330
(+)
TPP
2823441-2824221 (+)
Bsel_2598
ABC transporter related protein
Bsel_2598
Operon
DOOR ID:
712882
Bsel_2598,
Bsel_2599,
Bsel_2600
View Structure
29
2846004-2846111
(-)
TPP
2845169-2845934 (-)
Bsel_2617
Short-chain dehydrogenase/reductase SDR
Bsel_2617
Single gene
DOOR ID:
2872848
Bsel_2617
View Structure
30
2908067-2908179
(-)
SAM
2907571-2907919 (-)
Bsel_2677
Bsel_2677
Single gene
DOOR ID:
2872869
Bsel_2677
View Structure
31
2919430-2919537
(-)
TPP
2918764-2919322 (-)
Bsel_2693
Thiamine monophosphate synthase
Bsel_2693
Operon
DOOR ID:
712904
Bsel_2689,
Bsel_2690,
Bsel_2691,
Bsel_2692,
Bsel_2693
View Structure
32
3133014-3133213
(+)
cobalamin
3133400-3134420 (+)
Bsel_2898
Periplasmic binding protein
Bsel_2898
Operon
DOOR ID:
712944
Bsel_2898,
Bsel_2899,
Bsel_2900
View Structure
Genome:
Bacillus selenitireducens MLS10
(
NC_014219.1
);
Phylum:
Firmicutes
a:33:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"40466-40511";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:11:"40518-40926";i:10;s:1:"+";i:11;s:9:"Bsel_0027";i:12;s:148:"NADPH-dependent 7-cyano-7-deazaguanine reductase (3) (7-cyano-7-carbaguanine reductase) (NADPH-dependent nitrile oxidoreductase) (PreQ(0) reductase)";i:13;s:9:"Bsel_0027";i:14;s:6:"Operon";i:15;s:6:"712352";i:16;s:39:"Bsel_0027;Bsel_0028;Bsel_0029;Bsel_0030";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"186146-186311";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"184555-185917";i:10;s:1:"-";i:11;s:9:"Bsel_0173";i:12;s:26:"Magnesium transporter MgtE";i:13;s:9:"Bsel_0173";i:14;s:11:"Single gene";i:15;s:7:"2871991";i:16;s:9:"Bsel_0173";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"320456-320635";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"318093-320301";i:10;s:1:"-";i:11;s:9:"Bsel_0306";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:9:"Bsel_0306";i:14;s:6:"Operon";i:15;s:6:"712404";i:16;s:59:"Bsel_0301;Bsel_0302;Bsel_0303;Bsel_0304;Bsel_0305;Bsel_0306";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"345889-346039";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"345052-345835";i:10;s:1:"-";i:11;s:9:"Bsel_0333";i:12;s:65:"Molybdenum ABC transporter; periplasmic molybdate-binding protein";i:13;s:9:"Bsel_0333";i:14;s:6:"Operon";i:15;s:6:"712414";i:16;s:29:"Bsel_0331;Bsel_0332;Bsel_0333";i:17;s:36:"molybdate ion transport [GO:0015689]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"393576-393737";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"393867-395673";i:10;s:1:"+";i:11;s:9:"Bsel_0378";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"Bsel_0378";i:14;s:11:"Single gene";i:15;s:7:"2872060";i:16;s:9:"Bsel_0378";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"400400-400499";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:13:"399483-400329";i:10;s:1:"-";i:11;s:9:"Bsel_0383";i:12;s:0:"";i:13;s:9:"Bsel_0383";i:14;s:11:"Single gene";i:15;s:7:"2872063";i:16;s:9:"Bsel_0383";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"508413-508522";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"508599-509721";i:10;s:1:"+";i:11;s:9:"Bsel_0483";i:12;s:32:"Cystathionine gamma-synthase (8)";i:13;s:9:"Bsel_0483";i:14;s:6:"Operon";i:15;s:6:"712446";i:16;s:19:"Bsel_0483;Bsel_0484";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"527676-527842";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"526034-527399";i:10;s:1:"-";i:11;s:9:"Bsel_0495";i:12;s:26:"Magnesium transporter MgtE";i:13;s:9:"Bsel_0495";i:14;s:6:"Operon";i:15;s:6:"712448";i:16;s:19:"Bsel_0494;Bsel_0495";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"652937-653016";i:6;s:1:"+";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:13:"653335-663157";i:10;s:1:"+";i:11;s:9:"Bsel_0606";i:12;s:43:"LPXTG-motif cell wall anchor domain protein";i:13;s:9:"Bsel_0606";i:14;s:6:"Operon";i:15;s:6:"712473";i:16;s:19:"Bsel_0606;Bsel_0607";i:17;s:26:"cell adhesion [GO:0007155]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"747376-747477";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"747613-749152";i:10;s:1:"+";i:11;s:9:"Bsel_0678";i:12;s:83:"GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)";i:13;s:9:"Bsel_0678";i:14;s:11:"Single gene";i:15;s:7:"2872155";i:16;s:9:"Bsel_0678";i:17;s:79:"glutamine metabolic process [GO:0006541]; GMP biosynthetic process [GO:0006177]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"749234-749335";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"749490-750804";i:10;s:1:"+";i:11;s:9:"Bsel_0679";i:12;s:34:"Xanthine/uracil/vitamin C permease";i:13;s:9:"Bsel_0679";i:14;s:11:"Single gene";i:15;s:7:"2872156";i:16;s:9:"Bsel_0679";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"758039-758140";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"758321-758807";i:10;s:1:"+";i:11;s:9:"Bsel_0688";i:12;s:117:"N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)";i:13;s:9:"Bsel_0688";i:14;s:6:"Operon";i:15;s:6:"712493";i:16;s:119:"Bsel_0688;Bsel_0689;Bsel_0690;Bsel_0691;Bsel_0692;Bsel_0693;Bsel_0694;Bsel_0695;Bsel_0696;Bsel_0697;Bsel_0698;Bsel_0699";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"807943-808025";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"808138-810217";i:10;s:1:"+";i:11;s:9:"Bsel_0736";i:12;s:46:"Methyl-accepting chemotaxis sensory transducer";i:13;s:9:"Bsel_0736";i:14;s:11:"single gene";i:15;s:7:"2872170";i:16;s:9:"Bsel_0736";i:17;s:32:"signal transduction [GO:0007165]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014219.1";i:2;s:32:"Bacillus selenitireducens MLS10 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1209134-1209236";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1208227-1209037";i:10;s:1:"-";i:11;s:9:"Bsel_1044";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"Bsel_1044";i:14;s:6:"Operon";i:15;s:6:"712560";i:16;s:29:"Bsel_1042;Bsel_1043;Bsel_1044";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; 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