About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
87894-87994
(-)
ykkC-yxkD
86574-87795 (-)
Snov_0096
Arginase/agmatinase/formiminoglutamase
Snov_0096
Single gene
DOOR ID:
2869852
Snov_0096
View Structure
2
513465-513566
(+)
glycine
513748-515044 (+)
Snov_0495
D-amino-acid dehydrogenase
Snov_0495
Single gene
DOOR ID:
2869976
Snov_0495
View Structure
3
513568-513688
(+)
glycine
513748-515044 (+)
Snov_0495
D-amino-acid dehydrogenase
Snov_0495
Single gene
DOOR ID:
2869976
Snov_0495
View Structure
4
673053-673168
(-)
TPP
672036-672987 (-)
Snov_0632
NMT1/THI5 like domain protein
Snov_0632
Single gene
DOOR ID:
2870034
Snov_0632
View Structure
5
884103-884174
(+)
SAH
884974-886057 (+)
Snov_0849
Alkanesulfonate monooxygenase
Snov_0849
Operon
DOOR ID:
711219
Snov_0849,
Snov_0850,
Snov_0851
View Structure
6
2204487-2204585
(-)
TPP
2203622-2204429 (-)
Snov_2104
Phosphomethylpyrimidine kinase
Snov_2104
Single gene
DOOR ID:
2870519
Snov_2104
View Structure
7
2697506-2697713
(-)
cobalamin
2696339-2697398 (-)
Snov_2572
Cobalamin biosynthesis protein CobW
Snov_2572
Single gene
DOOR ID:
2870707
Snov_2572
View Structure
8
2697780-2697997
(+)
cobalamin
2698028-2698214 (+)
Snov_2573
Cobalt transporter; subunit CbtB
Snov_2573
Operon
DOOR ID:
711580
Snov_2573,
Snov_2574,
Snov_2575,
Snov_2576,
Snov_2577
View Structure
9
2724881-2724998
(-)
TPP
2723835-2724837 (-)
Snov_2603
Glycine oxidase ThiO
Snov_2603
Operon
DOOR ID:
711583
Snov_2598,
Snov_2599,
Snov_2600,
Snov_2601,
Snov_2602,
Snov_2603
View Structure
10
3101943-3102060
(+)
TPP
3102160-3103972 (+)
Snov_2971
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Snov_2971
Single gene
DOOR ID:
2870889
Snov_2971
View Structure
11
3910474-3910535
(-)
fluoride
3910057-3910447 (-)
Snov_3702
Putative fluoride ion transporter CrcB
Snov_3702
Operon
DOOR ID:
711808
Snov_3701,
Snov_3702
View Structure
12
4742944-4743023
(+)
sam-alpha
4743069-4744275 (+)
Snov_4486
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Snov_4486
Single gene
DOOR ID:
2871410
Snov_4486
View Structure
Genome:
Starkeya novella DSM 506
(
NC_014217.1
);
Phylum:
Alphaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014217.1";i:2;s:25:"Starkeya novella DSM 506 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:11:"87894-87994";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:11:"86574-87795";i:10;s:1:"-";i:11;s:9:"Snov_0096";i:12;s:38:"Arginase/agmatinase/formiminoglutamase";i:13;s:9:"Snov_0096";i:14;s:11:"Single gene";i:15;s:7:"2869852";i:16;s:9:"Snov_0096";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014217.1";i:2;s:25:"Starkeya novella DSM 506 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"513465-513566";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"513748-515044";i:10;s:1:"+";i:11;s:9:"Snov_0495";i:12;s:27:"D-amino-acid dehydrogenase ";i:13;s:9:"Snov_0495";i:14;s:11:"Single gene";i:15;s:7:"2869976";i:16;s:9:"Snov_0495";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014217.1";i:2;s:25:"Starkeya novella DSM 506 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"513568-513688";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"513748-515044";i:10;s:1:"+";i:11;s:9:"Snov_0495";i:12;s:27:"D-amino-acid dehydrogenase ";i:13;s:9:"Snov_0495";i:14;s:11:"Single gene";i:15;s:7:"2869976";i:16;s:9:"Snov_0495";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014217.1";i:2;s:25:"Starkeya novella DSM 506 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"673053-673168";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"672036-672987";i:10;s:1:"-";i:11;s:9:"Snov_0632";i:12;s:29:"NMT1/THI5 like domain protein";i:13;s:9:"Snov_0632";i:14;s:11:"Single gene";i:15;s:7:"2870034";i:16;s:9:"Snov_0632";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014217.1";i:2;s:25:"Starkeya novella DSM 506 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"884103-884174";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"884974-886057";i:10;s:1:"+";i:11;s:9:"Snov_0849";i:12;s:30:"Alkanesulfonate monooxygenase ";i:13;s:9:"Snov_0849";i:14;s:6:"Operon";i:15;s:6:"711219";i:16;s:29:"Snov_0849;Snov_0850;Snov_0851";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014217.1";i:2;s:25:"Starkeya novella DSM 506 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2204487-2204585";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2203622-2204429";i:10;s:1:"-";i:11;s:9:"Snov_2104";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:9:"Snov_2104";i:14;s:11:"Single gene";i:15;s:7:"2870519";i:16;s:9:"Snov_2104";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014217.1";i:2;s:25:"Starkeya novella DSM 506 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2697506-2697713";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2696339-2697398";i:10;s:1:"-";i:11;s:9:"Snov_2572";i:12;s:35:"Cobalamin biosynthesis protein CobW";i:13;s:9:"Snov_2572";i:14;s:11:"Single gene";i:15;s:7:"2870707";i:16;s:9:"Snov_2572";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014217.1";i:2;s:25:"Starkeya novella DSM 506 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2697780-2697997";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2698028-2698214";i:10;s:1:"+";i:11;s:9:"Snov_2573";i:12;s:32:"Cobalt transporter; subunit CbtB";i:13;s:9:"Snov_2573";i:14;s:6:"Operon";i:15;s:6:"711580";i:16;s:49:"Snov_2573;Snov_2574;Snov_2575;Snov_2576;Snov_2577";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014217.1";i:2;s:25:"Starkeya novella DSM 506 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2724881-2724998";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2723835-2724837";i:10;s:1:"-";i:11;s:9:"Snov_2603";i:12;s:20:"Glycine oxidase ThiO";i:13;s:9:"Snov_2603";i:14;s:6:"Operon";i:15;s:6:"711583";i:16;s:59:"Snov_2598;Snov_2599;Snov_2600;Snov_2601;Snov_2602;Snov_2603";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014217.1";i:2;s:25:"Starkeya novella DSM 506 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3101943-3102060";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3102160-3103972";i:10;s:1:"+";i:11;s:9:"Snov_2971";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Snov_2971";i:14;s:11:"Single gene";i:15;s:7:"2870889";i:16;s:9:"Snov_2971";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014217.1";i:2;s:25:"Starkeya novella DSM 506 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3910474-3910535";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3910057-3910447";i:10;s:1:"-";i:11;s:9:"Snov_3702";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"Snov_3702";i:14;s:6:"Operon";i:15;s:6:"711808";i:16;s:19:"Snov_3701;Snov_3702";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014217.1";i:2;s:25:"Starkeya novella DSM 506 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4742944-4743023";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"4743069-4744275";i:10;s:1:"+";i:11;s:9:"Snov_4486";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:9:"Snov_4486";i:14;s:11:"Single gene";i:15;s:7:"2871410";i:16;s:9:"Snov_4486";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}}
