Genome: Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 (NC_014215.1); Phylum: Actinobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 418311-418414 (-)TPP416604-417456 (-)thiE1

Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)		PFREUD_03370Operon

DOOR ID: 710001		PFREUD_03360 (thiD1),
PFREUD_03370 (thiE1),
PFREUD_03380 (thiM)		 View Structure
2 556119-556242 (-)cobalamin555378-556086 (-)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		PFREUD_04590Operon

DOOR ID: 710028		PFREUD_04530,
PFREUD_04540 (hrpA1),
PFREUD_04550 (cobA),
PFREUD_04560 (cbiO1),
PFREUD_04570 (cbiQ2),
PFREUD_04580 (cbiN),
PFREUD_04590 (cbiM)		 View Structure
3 712100-712169 (-)cobalamin711390-711942 (-)PFREUD_06170

PFREUD_06170Operon

DOOR ID: 710056		PFREUD_06140 (pf2694),
PFREUD_06150 (cbiO2),
PFREUD_06160,
PFREUD_06170,
PFREUD_06180,
PFREUD_06190		 View Structure
4 876819-877029 (-)cobalamin874553-876470 (-)mutA

Methylmalonyl-CoA mutase small subunit (Methylmalonyl-CoA mutase beta subunit) (MCB-beta) 		PFREUD_07660Operon

DOOR ID: 710094		PFREUD_07640 (argK),
PFREUD_07650 (mutB),
PFREUD_07660 (mutA)		 View Structure
5 1030413-1030488 (-)cobalamin1029646-1030321 (-)int

Phage integrase		PFREUD_09140Single gene

DOOR ID: 2868410		PFREUD_09140 (int) View Structure
6 1238758-1238887 (-)FMN1237750-1238641 (-)PFREUD_11030

Binding-protein-dependent transport systems inner membrane component		PFREUD_11030Operon

DOOR ID: 710164		PFREUD_10990 (RED65_15082),
PFREUD_11000 (pf3022),
PFREUD_11010,
PFREUD_11020,
PFREUD_11030		 View Structure
7 1360543-1360634 (+)TPP1361396-1361693 (+)PFREUD_12100

PFREUD_12100Single gene

DOOR ID: 2868506		PFREUD_12100 View Structure
8 1368094-1368150 (+)cobalamin1368266-1368776 (-)pgm

Phosphoglycerate mutase 		PFREUD_12180Single gene

DOOR ID: 2868510		PFREUD_12180 (pgm) View Structure
9 1882077-1882150 (-)fluoride1880722-1881994 (-)eno2

Enolase (1) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase)		PFREUD_17250Single gene

DOOR ID: 2868679		PFREUD_17250 (eno2) View Structure
10 1914034-1914105 (+)fluoride1914140-1914674 (+)usp

Stress protein		PFREUD_17570Operon

DOOR ID: 710296		PFREUD_17570 (usp),
PFREUD_17580,
PFREUD_17590,
PFREUD_17600		 View Structure
11 2175821-2175927 (+)TPP2175966-2176602 (+)PFREUD_20180

ABC transporter		PFREUD_20180Operon

DOOR ID: 710348		PFREUD_20180,
PFREUD_20190 (cbiO3),
PFREUD_20200 (cbiQ1),
PFREUD_20210		 View Structure
12 2256452-2256561 (-)TPP2253220-2254453 (+)PFREUD_20890

PFREUD_20890Single gene

DOOR ID: 2868826		PFREUD_20890 View Structure
13 2315956-2316090 (-)FMN2314617-2315838 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		PFREUD_21470Operon

DOOR ID: 710379		PFREUD_21440 (ribH),
PFREUD_21450 (ribAB),
PFREUD_21460 (ribC),
PFREUD_21470 (ribD)		 View Structure
14 2591920-2592099 (-)cobalamin2589577-2590792 (-)fepD

Iron ABC transporter; permease protein		PFREUD_24010Operon

DOOR ID: 710434		PFREUD_23990,
PFREUD_24000 (fepC1),
PFREUD_24010 (fepD),
PFREUD_24020 (fepC2)		 View Structure