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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
50031-50147
(-)
TPP
48038-48602 (+)
Tbis_0040
Methylated-DNA/protein-cysteinemethyltransferase
Tbis_0040
Single gene
DOOR ID:
2853870
Tbis_0040
View Structure
2
1085973-1086070
(-)
glycine
1084673-1085768 (-)
Tbis_0961
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Tbis_0961
Operon
DOOR ID:
702966
Tbis_0960,
Tbis_0961
View Structure
3
1396507-1396642
(+)
cobalamin
1396720-1397659 (+)
Tbis_1231
Periplasmic binding protein
Tbis_1231
Operon
DOOR ID:
703017
Tbis_1231,
Tbis_1232,
Tbis_1233,
Tbis_1234
View Structure
4
1518096-1518208
(-)
TPP
1516782-1516983 (-)
Tbis_1339
Thiamine biosynthesis protein ThiS
Tbis_1339
Operon
DOOR ID:
703036
Tbis_1337,
Tbis_1338,
Tbis_1339,
Tbis_1340
View Structure
5
1551820-1551968
(+)
FMN
1552086-1553175 (+)
Tbis_1371
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Tbis_1371
Operon
DOOR ID:
703043
Tbis_1371,
Tbis_1372,
Tbis_1373,
Tbis_1374,
Tbis_1375,
Tbis_1376
View Structure
6
1966310-1966403
(+)
glycine
1966585-1969420 (+)
Tbis_1697
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Tbis_1697
Single gene
DOOR ID:
2854587
Tbis_1697
View Structure
7
2028795-2028921
(-)
ydaO-yuaA
2028091-2028778 (-)
Tbis_1754
CHAP domain containing protein
Tbis_1754
Single gene
DOOR ID:
2854611
Tbis_1754
View Structure
8
2607750-2607850
(-)
ZMP-ZTP
2606463-2607726 (-)
Tbis_2242
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Tbis_2242
Single gene
DOOR ID:
2854805
Tbis_2242
View Structure
9
2910355-2910503
(+)
cobalamin
2910752-2911532 (+)
Tbis_2488
Tbis_2488
Operon
DOOR ID:
703258
Tbis_2487,
Tbis_2488
View Structure
10
2918608-2918731
(+)
cobalamin
2918787-2922378 (+)
Tbis_2495
Cobaltochelatase; CobN subunit
Tbis_2495
Operon
DOOR ID:
703261
Tbis_2495,
Tbis_2496
View Structure
11
3859996-3860135
(-)
SAM
3858729-3859980 (-)
Tbis_3301
Threonine synthase
Tbis_3301
Operon
DOOR ID:
703413
Tbis_3300,
Tbis_3301
View Structure
12
4015620-4015736
(+)
SAM-IV
4015780-4017154 (+)
Tbis_3439
Cysteine desulfurase
Tbis_3439
Operon
DOOR ID:
703434
Tbis_3439,
Tbis_3440
View Structure
13
4084554-4084738
(-)
cobalamin
4083145-4084351 (-)
Tbis_3498
Periplasmic binding protein
Tbis_3498
Operon
DOOR ID:
703445
Tbis_3495,
Tbis_3496,
Tbis_3497,
Tbis_3498
View Structure
Genome:
Thermobispora bispora DSM 43833
(
NC_014165.1
);
Phylum:
Actinobacteria
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tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014165.1";i:2;s:32:"Thermobispora bispora DSM 43833 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2910355-2910503";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2910752-2911532";i:10;s:1:"+";i:11;s:9:"Tbis_2488";i:12;s:0:"";i:13;s:9:"Tbis_2488";i:14;s:6:"Operon";i:15;s:6:"703258";i:16;s:19:"Tbis_2487;Tbis_2488";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014165.1";i:2;s:32:"Thermobispora bispora DSM 43833 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2918608-2918731";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2918787-2922378";i:10;s:1:"+";i:11;s:9:"Tbis_2495";i:12;s:31:"Cobaltochelatase; CobN subunit ";i:13;s:9:"Tbis_2495";i:14;s:6:"Operon";i:15;s:6:"703261";i:16;s:19:"Tbis_2495;Tbis_2496";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014165.1";i:2;s:32:"Thermobispora bispora DSM 43833 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3859996-3860135";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3858729-3859980";i:10;s:1:"-";i:11;s:9:"Tbis_3301";i:12;s:18:"Threonine synthase";i:13;s:9:"Tbis_3301";i:14;s:6:"Operon";i:15;s:6:"703413";i:16;s:19:"Tbis_3300;Tbis_3301";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014165.1";i:2;s:32:"Thermobispora bispora DSM 43833 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4015620-4015736";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"4015780-4017154";i:10;s:1:"+";i:11;s:9:"Tbis_3439";i:12;s:21:"Cysteine desulfurase ";i:13;s:9:"Tbis_3439";i:14;s:6:"Operon";i:15;s:6:"703434";i:16;s:19:"Tbis_3439;Tbis_3440";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014165.1";i:2;s:32:"Thermobispora bispora DSM 43833 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4084554-4084738";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4083145-4084351";i:10;s:1:"-";i:11;s:9:"Tbis_3498";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Tbis_3498";i:14;s:6:"Operon";i:15;s:6:"703445";i:16;s:39:"Tbis_3495;Tbis_3496;Tbis_3497;Tbis_3498";i:17;s:0:"";i:18;s:15:"View Structure ";}}