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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
574482-574593
(+)
SAM-IV
574658-575948 (+)
Tpau_0546
Cysteine desulfurase
Tpau_0546
Operon
DOOR ID:
701627
Tpau_0546,
Tpau_0547,
Tpau_0548
View Structure
2
969773-969893
(-)
SAM-IV
968609-969764 (-)
Tpau_0944
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Tpau_0944
Single gene
DOOR ID:
2852462
Tpau_0944
View Structure
3
1675366-1675488
(-)
cobalamin
1674359-1675325 (-)
Tpau_1600
Periplasmic binding protein
Tpau_1600
Operon
DOOR ID:
701865
Tpau_1598,
Tpau_1599,
Tpau_1600
View Structure
4
1993238-1993321
(-)
ZMP-ZTP
1992335-1993223 (-)
Tpau_1907
Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]
Tpau_1907
Operon
DOOR ID:
701935
Tpau_1906,
Tpau_1907
View Structure
5
2239030-2239104
(-)
SAH
2235283-2239015 (-)
Tpau_2144
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Tpau_2144
Operon
DOOR ID:
701995
Tpau_2143,
Tpau_2144
View Structure
6
2413037-2413163
(+)
cobalamin
2413197-2414238 (+)
Tpau_2321
Transport system permease protein
Tpau_2321
Operon
DOOR ID:
702034
Tpau_2321,
Tpau_2322,
Tpau_2323
View Structure
7
2430909-2431010
(-)
glycine
2428001-2430821 (-)
Tpau_2334
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Tpau_2334
Operon
DOOR ID:
702036
Tpau_2331,
Tpau_2332,
Tpau_2333,
Tpau_2334
View Structure
8
2592145-2592315
(-)
ykoK
2591779-2591917 (-)
Tpau_2498
Tpau_2498
Single gene
DOOR ID:
2852893
Tpau_2498
View Structure
9
2658696-2658854
(-)
FMN
2658017-2658641 (-)
Tpau_2562
Riboflavin synthase; alpha subunit
Tpau_2562
Operon
DOOR ID:
702086
Tpau_2559,
Tpau_2560,
Tpau_2561,
Tpau_2562
View Structure
10
2791931-2792094
(-)
ydaO-yuaA
2791216-2791915 (-)
Tpau_2684
NLP/P60 protein
Tpau_2684
Single gene
DOOR ID:
2852930
Tpau_2684
View Structure
11
3267130-3267194
(+)
ykkC-III
3267211-3267526 (+)
Tpau_3160
Tpau_3160
operon
DOOR ID:
702214
Tpau_3159,
Tpau_3160
View Structure
12
3417963-3418138
(+)
ykoK
3418410-3419133 (+)
Tpau_3323
MgtC/SapB transporter
Tpau_3323
Operon
DOOR ID:
702250
Tpau_3323,
Tpau_3324,
Tpau_3325
View Structure
13
3854279-3854390
(+)
TPP
3856083-3856971 (+)
Tpau_3738
Phosphomethylpyrimidine kinase
Tpau_3738
Operon
DOOR ID:
702335
Tpau_3737,
Tpau_3738,
Tpau_3739
View Structure
14
3867156-3867255
(-)
TPP
3866116-3867145 (-)
Tpau_3748
Glycine oxidase ThiO
Tpau_3748
Operon
DOOR ID:
702337
Tpau_3746,
Tpau_3747,
Tpau_3748
View Structure
Genome:
Tsukamurella paurometabola DSM 20162
(
NC_014158.1
);
Phylum:
Actinobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"574482-574593";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"574658-575948";i:10;s:1:"+";i:11;s:9:"Tpau_0546";i:12;s:21:"Cysteine desulfurase ";i:13;s:9:"Tpau_0546";i:14;s:6:"Operon";i:15;s:6:"701627";i:16;s:29:"Tpau_0546;Tpau_0547;Tpau_0548";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"969773-969893";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"968609-969764";i:10;s:1:"-";i:11;s:9:"Tpau_0944";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"Tpau_0944";i:14;s:11:"Single gene";i:15;s:7:"2852462";i:16;s:9:"Tpau_0944";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1675366-1675488";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1674359-1675325";i:10;s:1:"-";i:11;s:9:"Tpau_1600";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Tpau_1600";i:14;s:6:"Operon";i:15;s:6:"701865";i:16;s:29:"Tpau_1598;Tpau_1599;Tpau_1600";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1993238-1993321";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"1992335-1993223";i:10;s:1:"-";i:11;s:9:"Tpau_1907";i:12;s:78:"Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]";i:13;s:9:"Tpau_1907";i:14;s:6:"Operon";i:15;s:6:"701935";i:16;s:19:"Tpau_1906;Tpau_1907";i:17;s:189:"histidine biosynthetic process [GO:0000105]; methionine biosynthetic process [GO:0009086]; purine nucleotide biosynthetic process [GO:0006164]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2239030-2239104";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2235283-2239015";i:10;s:1:"-";i:11;s:9:"Tpau_2144";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:9:"Tpau_2144";i:14;s:6:"Operon";i:15;s:6:"701995";i:16;s:19:"Tpau_2143;Tpau_2144";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2413037-2413163";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2413197-2414238";i:10;s:1:"+";i:11;s:9:"Tpau_2321";i:12;s:33:"Transport system permease protein";i:13;s:9:"Tpau_2321";i:14;s:6:"Operon";i:15;s:6:"702034";i:16;s:29:"Tpau_2321;Tpau_2322;Tpau_2323";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2430909-2431010";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2428001-2430821";i:10;s:1:"-";i:11;s:9:"Tpau_2334";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Tpau_2334";i:14;s:6:"Operon";i:15;s:6:"702036";i:16;s:39:"Tpau_2331;Tpau_2332;Tpau_2333;Tpau_2334";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2592145-2592315";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2591779-2591917";i:10;s:1:"-";i:11;s:9:"Tpau_2498";i:12;s:0:"";i:13;s:9:"Tpau_2498";i:14;s:11:"Single gene";i:15;s:7:"2852893";i:16;s:9:"Tpau_2498";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2658696-2658854";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2658017-2658641";i:10;s:1:"-";i:11;s:9:"Tpau_2562";i:12;s:35:"Riboflavin synthase; alpha subunit ";i:13;s:9:"Tpau_2562";i:14;s:6:"Operon";i:15;s:6:"702086";i:16;s:39:"Tpau_2559;Tpau_2560;Tpau_2561;Tpau_2562";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2791931-2792094";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2791216-2791915";i:10;s:1:"-";i:11;s:9:"Tpau_2684";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Tpau_2684";i:14;s:11:"Single gene";i:15;s:7:"2852930";i:16;s:9:"Tpau_2684";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3267130-3267194";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"3267211-3267526";i:10;s:1:"+";i:11;s:9:"Tpau_3160";i:12;s:0:"";i:13;s:9:"Tpau_3160";i:14;s:6:"operon";i:15;s:6:"702214";i:16;s:19:"Tpau_3159;Tpau_3160";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3417963-3418138";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"3418410-3419133";i:10;s:1:"+";i:11;s:9:"Tpau_3323";i:12;s:21:"MgtC/SapB transporter";i:13;s:9:"Tpau_3323";i:14;s:6:"Operon";i:15;s:6:"702250";i:16;s:29:"Tpau_3323;Tpau_3324;Tpau_3325";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3854279-3854390";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3856083-3856971";i:10;s:1:"+";i:11;s:9:"Tpau_3738";i:12;s:31:"Phosphomethylpyrimidine kinase ";i:13;s:9:"Tpau_3738";i:14;s:6:"Operon";i:15;s:6:"702335";i:16;s:29:"Tpau_3737;Tpau_3738;Tpau_3739";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014158.1";i:2;s:37:"Tsukamurella paurometabola DSM 20162 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3867156-3867255";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3866116-3867145";i:10;s:1:"-";i:11;s:9:"Tpau_3748";i:12;s:20:"Glycine oxidase ThiO";i:13;s:9:"Tpau_3748";i:14;s:6:"Operon";i:15;s:6:"702337";i:16;s:29:"Tpau_3746;Tpau_3747;Tpau_3748";i:17;s:0:"";i:18;s:15:"View Structure ";}}