Genome: Thermincola potens JR (NC_014152.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 12650-12749 (+)glycine13371-14460 (+)TherJR_0012

Phosphoserine aminotransferase (2) (Phosphohydroxythreonine aminotransferase) (PSAT)		TherJR_0012Operon

DOOR ID: 700153		TherJR_0012,
TherJR_0013		 View Structure
2 12761-12857 (+)glycine13371-14460 (+)TherJR_0012

Phosphoserine aminotransferase (2) (Phosphohydroxythreonine aminotransferase) (PSAT)		TherJR_0012Operon

DOOR ID: 700153		TherJR_0012,
TherJR_0013		 View Structure
3 66533-66642 (+)TPP66905-67193 (+)TherJR_0062

TherJR_0062Operon

DOOR ID: 700162		TherJR_0062,
TherJR_0063,
TherJR_0064		 View Structure
4 394105-394273 (+)glmS394350-396180 (+)TherJR_0380

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		TherJR_0380Single gene

DOOR ID: 2850424		TherJR_0380 View Structure
5 434673-434757 (+)c-di-GMP-I434870-435161 (+)TherJR_0427

Uncharacterized protein		TherJR_0427single gene

DOOR ID: 2850434		TherJR_0427 View Structure
6 454978-455154 (+)cobalamin455275-456007 (+)TherJR_0445

TherJR_0445Operon

DOOR ID: 700237		TherJR_0445,
TherJR_0446		 View Structure
7 554278-554450 (-)cobalamin552817-554173 (-)TherJR_0552

Permease for cytosine/purines uracil thiamine allantoin		TherJR_0552Operon

DOOR ID: 700261		TherJR_0550,
TherJR_0551,
TherJR_0552		 View Structure
8 579265-579329 (+)fluoride579377-580061 (+)TherJR_0583

NifU-like domain-containing protein		TherJR_0583Operon

DOOR ID: 700270		TherJR_0582,
TherJR_0583,
TherJR_0584,
TherJR_0585,
TherJR_0586,
TherJR_0587		 View Structure
9 582315-582385 (+)fluoride582461-584225 (+)TherJR_0588

Dynamin family protein		TherJR_0588Single gene

DOOR ID: 2850473		TherJR_0588 View Structure
10 597189-597284 (+)ykkC-yxkD597679-598720 (+)TherJR_0600

Aliphatic sulfonates family ABC transporter; periplasmic ligand-binding protein		TherJR_0600Operon

DOOR ID: 700273		TherJR_0600,
TherJR_0601,
TherJR_0602,
TherJR_0603		 View Structure
11 715265-715362 (+)TPP715430-716909 (+)TherJR_0724

Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)		TherJR_0724Operon

DOOR ID: 700293		TherJR_0724,
TherJR_0725		 View Structure
12 728265-728363 (+)c-di-GMP-I728431-728725 (+)TherJR_0738

Uncharacterized protein		TherJR_0738single gene

DOOR ID: 2850519		TherJR_0738 View Structure
13 748327-748459 (+)MOCO748543-748723 (+)TherJR_0756

TherJR_0756Single gene

DOOR ID: 2850523		TherJR_0756 View Structure
14 827070-827214 (+)ykkC-yxkD827450-828824 (+)TherJR_0823

Xanthine/uracil/vitamin C permease		TherJR_0823Single gene

DOOR ID: 2850542		TherJR_0823 View Structure
15 829632-829732 (+)purine829858-831151 (+)TherJR_0825

Adenylosuccinate lyase (ASL) (Adenylosuccinase)		TherJR_0825Operon

DOOR ID: 700312		TherJR_0825,
TherJR_0826,
TherJR_0827,
TherJR_0828,
TherJR_0829,
TherJR_0830		 View Structure
16 891460-891561 (-)purine890020-891130 (-)TherJR_0880

Basic membrane lipoprotein		TherJR_0880Single gene

DOOR ID: 2850561		TherJR_0880 View Structure
17 891749-891848 (+)c-di-GMP-I891927-892752 (+)TherJR_0881

Uncharacterized protein		TherJR_0881single gene

DOOR ID: 2850562		TherJR_0881 View Structure
18 1107721-1107812 (+)c-di-GMP-I1107897-1108893 (+)TherJR_1063

Transcriptional regulator		TherJR_1063operon

DOOR ID: 700367		TherJR_1061,
TherJR_1062,
TherJR_1063		 View Structure
19 1244571-1244678 (+)SAM1244818-1246015 (+)TherJR_1173

TherJR_1173Operon

DOOR ID: 700394		TherJR_1173,
TherJR_1174,
TherJR_1175		 View Structure
20 1320454-1320638 (+)cobalamin1321010-1321694 (+)TherJR_1251

Uncharacterized conserved protein UCP037409; membrane transporter		TherJR_1251Operon

DOOR ID: 700413		TherJR_1251,
TherJR_1252,
TherJR_1253,
TherJR_1254		 View Structure
21 1339155-1339341 (+)cobalamin1339722-1340469 (+)TherJR_1262

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		TherJR_1262Operon

DOOR ID: 700415		TherJR_1262,
TherJR_1263,
TherJR_1264,
TherJR_1265,
TherJR_1266		 View Structure
22 1377677-1377864 (+)cobalamin1377967-1378576 (+)TherJR_1306

Adenosylcobinamide-phosphate guanylyltransferase (2)		TherJR_1306Operon

DOOR ID: 700425		TherJR_1306,
TherJR_1307,
TherJR_1308,
TherJR_1309,
TherJR_1310,
TherJR_1311,
TherJR_1312		 View Structure
23 1517872-1517980 (+)TPP1518064-1518844 (+)TherJR_1442

Thiamine thiazole synthase 		TherJR_1442Operon

DOOR ID: 700454		TherJR_1442,
TherJR_1443		 View Structure
24 1610104-1610190 (-)c-di-GMP-I1609611-1610028 (-)TherJR_1545

Flagellar basal body rod protein FlgB		TherJR_1545operon

DOOR ID: 700473		TherJR_1543,
TherJR_1544,
TherJR_1545		 View Structure
25 1634635-1634819 (-)cobalamin1633404-1634532 (-)TherJR_1571

Cobalt-precorrin-5B C(1)-methyltransferase (95) (Cobalt-precorrin-6A synthase)		TherJR_1571Operon

DOOR ID: 700476		TherJR_1561,
TherJR_1562,
TherJR_1563,
TherJR_1564,
TherJR_1565,
TherJR_1566,
TherJR_1567,
TherJR_1568,
TherJR_1569,
TherJR_1570,
TherJR_1571		 View Structure
26 1656944-1657065 (+)c-di-GMP-I1657340-1659197 (+)TherJR_1595

Methyl-accepting chemotaxis sensory transducer		TherJR_1595operon

DOOR ID: 700482		TherJR_1595,
TherJR_1596		 View Structure
27 1768573-1768652 (-)Nico1767305-1768481 (-)TherJR_1712

Cation diffusion facilitator family transporter		TherJR_1712Single gene

DOOR ID: 2850785		TherJR_1712 View Structure
28 1833710-1833840 (-)FMN1832443-1833601 (-)TherJR_1783

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		TherJR_1783Operon

DOOR ID: 700526		TherJR_1780,
TherJR_1781,
TherJR_1782,
TherJR_1783		 View Structure
29 1866350-1866488 (-)ydaO-yuaA1864903-1866250 (-)TherJR_1812

Lysine 2;3-aminomutase YodO family protein 		TherJR_1812Single gene

DOOR ID: 2850803		TherJR_1812 View Structure
30 1894781-1894931 (-)c-di-GMP-I1893847-1894432 (-)TherJR_1836

Restriction endonuclease		TherJR_1836single gene

DOOR ID: 2850811		TherJR_1836 View Structure
31 2130990-2131172 (+)cobalamin2131288-2132338 (+)TherJR_2065

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		TherJR_2065Single gene

DOOR ID: 2850884		TherJR_2065 View Structure
32 2160275-2160379 (-)c-di-GMP-I2158832-2160092 (-)TherJR_2092

Na(+)/H(+) antiporter NhaA (Sodium/proton antiporter NhaA)		TherJR_2092single gene

DOOR ID: 2850887		TherJR_2092 View Structure
33 2209956-2210105 (-)ydaO-yuaA2209172-2209949 (-)TherJR_2137

Cell wall hydrolase SleB		TherJR_2137Single gene

DOOR ID: 2850905		TherJR_2137 View Structure
34 2310276-2310387 (-)SAM2309252-2310170 (-)TherJR_2227

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		TherJR_2227Operon

DOOR ID: 700618		TherJR_2226,
TherJR_2227		 View Structure
35 2315818-2315939 (-)MOCO2314947-2315739 (-)TherJR_2233

Molybdenum ABC transporter; periplasmic molybdate-binding protein		TherJR_2233Operon

DOOR ID: 700619		TherJR_2229,
TherJR_2230,
TherJR_2231,
TherJR_2232,
TherJR_2233		 View Structure
36 2411433-2411555 (-)c-di-GMP-I2410130-2411342 (-)TherJR_2333

Diguanylate phosphodiesterase		TherJR_2333single gene

DOOR ID: 2850972		TherJR_2333 View Structure
37 2469725-2469903 (-)cobalamin2469203-2469398 (-)TherJR_2399

Phosphate ABC transporter; permease protein		TherJR_2399Single gene

DOOR ID: 2850995		TherJR_2399 View Structure
38 2479631-2479800 (+)ykoK2479923-2480862 (+)TherJR_2407

Mg2 transporter protein CorA family protein		TherJR_2407Single gene

DOOR ID: 2850996		TherJR_2407 View Structure
39 2541639-2541767 (+)ydaO-yuaA2541845-2543678 (+)TherJR_2465

TherJR_2465Operon

DOOR ID: 700668		TherJR_2465,
TherJR_2466		 View Structure
40 2838813-2838980 (-)yybP-ykoY2838057-2838711 (-)TherJR_2729

TherJR_2729Single gene

DOOR ID: 2851104		TherJR_2729 View Structure
41 2870749-2870835 (-)c-di-GMP-I2870338-2870689 (-)TherJR_2763

Uncharacterized protein		TherJR_2763single gene

DOOR ID: 2851114		TherJR_2763 View Structure
42 2920938-2921021 (-)c-di-GMP-I2920665-2920830 (-)TherJR_2815

Flp/Fap pilin component		TherJR_2815single gene

DOOR ID: 2851125		TherJR_2815 View Structure