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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
116088-116210
(+)
glycine
116414-119417 (+)
Cfla_0093
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Cfla_0093
Operon
DOOR ID:
699346
Cfla_0093,
Cfla_0094,
Cfla_0095
View Structure
2
131854-131960
(-)
SAM
130688-131768 (-)
Cfla_0106
Methylenetetrahydrofolate reductase (0)
Cfla_0106
Operon
DOOR ID:
699348
Cfla_0105,
Cfla_0106
View Structure
3
223785-223856
(-)
ykkC-III
223442-223772 (-)
Cfla_0186
Cfla_0186
single gene
DOOR ID:
2849199
Cfla_0186
View Structure
4
255760-255886
(+)
TPP
255971-257075 (+)
Cfla_0218
ABC transporter; periplasmic binding protein; thiB subfamily
Cfla_0218
Operon
DOOR ID:
699373
Cfla_0218,
Cfla_0219,
Cfla_0220
View Structure
5
529323-529414
(-)
TPP
528129-529317 (-)
Cfla_0495
Glycine oxidase ThiO
Cfla_0495
Operon
DOOR ID:
699434
Cfla_0493,
Cfla_0494,
Cfla_0495
View Structure
6
842943-843170
(+)
ydaO-yuaA
843172-843943 (+)
Cfla_0773
NLP/P60 protein
Cfla_0773
Single gene
DOOR ID:
2849416
Cfla_0773
View Structure
7
1819749-1819847
(+)
TPP
1820674-1821340 (+)
Cfla_1635
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
Cfla_1635
Operon
DOOR ID:
699708
Cfla_1634,
Cfla_1635,
Cfla_1636,
Cfla_1637
View Structure
8
2072434-2072567
(+)
FMN
2072651-2073812 (+)
Cfla_1858
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Cfla_1858
Operon
DOOR ID:
699760
Cfla_1858,
Cfla_1859,
Cfla_1860,
Cfla_1861,
Cfla_1862,
Cfla_1863,
Cfla_1864
View Structure
9
2407232-2407306
(-)
c-di-GMP-I
2406994-2407213 (-)
Cfla_2159
DNA binding domain protein; excisionase family
Cfla_2159
single gene
DOOR ID:
2849779
Cfla_2159
View Structure
10
2804532-2804621
(-)
ZMP-ZTP
2803177-2804461 (-)
Cfla_2501
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Cfla_2501
Operon
DOOR ID:
699892
Cfla_2500,
Cfla_2501,
Cfla_2502,
Cfla_2503,
Cfla_2504
View Structure
11
2842666-2842756
(-)
ZMP-ZTP
2840985-2842620 (-)
Cfla_2532
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Cfla_2532
Single gene
DOOR ID:
2849906
Cfla_2532
View Structure
12
3267556-3267670
(-)
SAM-IV
3266077-3267520 (-)
Cfla_2942
Cysteine desulfurase
Cfla_2942
Single gene
DOOR ID:
2850021
Cfla_2942
View Structure
13
3269128-3269225
(+)
SAM
3269230-3269674 (+)
Cfla_2946
Rhodanese domain protein
Cfla_2946
Operon
DOOR ID:
699985
Cfla_2946,
Cfla_2947
View Structure
14
3348072-3348166
(-)
TPP
3346785-3347814 (-)
Cfla_3018
NMT1/THI5 like domain protein
Cfla_3018
Operon
DOOR ID:
700003
Cfla_3016,
Cfla_3017,
Cfla_3018
View Structure
15
3614462-3614575
(-)
SAM-IV
3613778-3614447 (-)
Cfla_3249
Cfla_3249
Single gene
DOOR ID:
2850128
Cfla_3249
View Structure
16
3848759-3848833
(-)
c-di-GMP-I
3848606-3848744 (-)
Cfla_3455
Uncharacterized protein
Cfla_3455
single gene
DOOR ID:
2850199
Cfla_3455
View Structure
Genome:
Cellulomonas flavigena DSM 20109
(
NC_014151.1
);
Phylum:
Actinobacteria
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"116088-116210";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"116414-119417";i:10;s:1:"+";i:11;s:9:"Cfla_0093";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Cfla_0093";i:14;s:6:"Operon";i:15;s:6:"699346";i:16;s:29:"Cfla_0093;Cfla_0094;Cfla_0095";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"131854-131960";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"130688-131768";i:10;s:1:"-";i:11;s:9:"Cfla_0106";i:12;s:39:"Methylenetetrahydrofolate reductase (0)";i:13;s:9:"Cfla_0106";i:14;s:6:"Operon";i:15;s:6:"699348";i:16;s:19:"Cfla_0105;Cfla_0106";i:17;s:143:"cellular amino acid biosynthetic process [GO:0008652]; methionine metabolic process [GO:0006555]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"223785-223856";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:13:"223442-223772";i:10;s:1:"-";i:11;s:9:"Cfla_0186";i:12;s:0:"";i:13;s:9:"Cfla_0186";i:14;s:11:"single gene";i:15;s:7:"2849199";i:16;s:9:"Cfla_0186";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"255760-255886";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"255971-257075";i:10;s:1:"+";i:11;s:9:"Cfla_0218";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:9:"Cfla_0218";i:14;s:6:"Operon";i:15;s:6:"699373";i:16;s:29:"Cfla_0218;Cfla_0219;Cfla_0220";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"529323-529414";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"528129-529317";i:10;s:1:"-";i:11;s:9:"Cfla_0495";i:12;s:20:"Glycine oxidase ThiO";i:13;s:9:"Cfla_0495";i:14;s:6:"Operon";i:15;s:6:"699434";i:16;s:29:"Cfla_0493;Cfla_0494;Cfla_0495";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"842943-843170";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"843172-843943";i:10;s:1:"+";i:11;s:9:"Cfla_0773";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Cfla_0773";i:14;s:11:"Single gene";i:15;s:7:"2849416";i:16;s:9:"Cfla_0773";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1819749-1819847";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1820674-1821340";i:10;s:1:"+";i:11;s:9:"Cfla_1635";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:9:"Cfla_1635";i:14;s:6:"Operon";i:15;s:6:"699708";i:16;s:39:"Cfla_1634;Cfla_1635;Cfla_1636;Cfla_1637";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2072434-2072567";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2072651-2073812";i:10;s:1:"+";i:11;s:9:"Cfla_1858";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Cfla_1858";i:14;s:6:"Operon";i:15;s:6:"699760";i:16;s:69:"Cfla_1858;Cfla_1859;Cfla_1860;Cfla_1861;Cfla_1862;Cfla_1863;Cfla_1864";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2407232-2407306";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2406994-2407213";i:10;s:1:"-";i:11;s:9:"Cfla_2159";i:12;s:46:"DNA binding domain protein; excisionase family";i:13;s:9:"Cfla_2159";i:14;s:11:"single gene";i:15;s:7:"2849779";i:16;s:9:"Cfla_2159";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2804532-2804621";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2803177-2804461";i:10;s:1:"-";i:11;s:9:"Cfla_2501";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Cfla_2501";i:14;s:6:"Operon";i:15;s:6:"699892";i:16;s:49:"Cfla_2500;Cfla_2501;Cfla_2502;Cfla_2503;Cfla_2504";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2842666-2842756";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2840985-2842620";i:10;s:1:"-";i:11;s:9:"Cfla_2532";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:9:"Cfla_2532";i:14;s:11:"Single gene";i:15;s:7:"2849906";i:16;s:9:"Cfla_2532";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3267556-3267670";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3266077-3267520";i:10;s:1:"-";i:11;s:9:"Cfla_2942";i:12;s:21:"Cysteine desulfurase ";i:13;s:9:"Cfla_2942";i:14;s:11:"Single gene";i:15;s:7:"2850021";i:16;s:9:"Cfla_2942";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3269128-3269225";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3269230-3269674";i:10;s:1:"+";i:11;s:9:"Cfla_2946";i:12;s:24:"Rhodanese domain protein";i:13;s:9:"Cfla_2946";i:14;s:6:"Operon";i:15;s:6:"699985";i:16;s:19:"Cfla_2946;Cfla_2947";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3348072-3348166";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3346785-3347814";i:10;s:1:"-";i:11;s:9:"Cfla_3018";i:12;s:29:"NMT1/THI5 like domain protein";i:13;s:9:"Cfla_3018";i:14;s:6:"Operon";i:15;s:6:"700003";i:16;s:29:"Cfla_3016;Cfla_3017;Cfla_3018";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3614462-3614575";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3613778-3614447";i:10;s:1:"-";i:11;s:9:"Cfla_3249";i:12;s:0:"";i:13;s:9:"Cfla_3249";i:14;s:11:"Single gene";i:15;s:7:"2850128";i:16;s:9:"Cfla_3249";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_014151.1";i:2;s:33:"Cellulomonas flavigena DSM 20109 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3848759-3848833";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3848606-3848744";i:10;s:1:"-";i:11;s:9:"Cfla_3455";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Cfla_3455";i:14;s:11:"single gene";i:15;s:7:"2850199";i:16;s:9:"Cfla_3455";i:17;s:0:"";i:18;s:15:"View Structure ";}}