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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
256818-256927
(-)
TPP
254842-256738 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ECL_00255
Operon
DOOR ID:
695220
ECL_00250
(thiH)
,
ECL_00251
(thiG)
,
ECL_00252
(thiS)
,
ECL_00253,
ECL_00254,
ECL_00255
(thiC)
View Structure
2
492801-492869
(+)
fluoride
492946-493855 (+)
ECL_00491
Inorganic diphosphatase
ECL_00491
Operon
DOOR ID:
695263
ECL_00490,
ECL_00491,
ECL_00492,
ECL_00493
View Structure
3
502972-503046
(-)
fluoride
501698-502022 (-)
ECL_00501
Phosphoglyceromutase 1
ECL_00501
Operon
DOOR ID:
695265
ECL_00500,
ECL_00501
View Structure
4
541124-541168
(+)
mini-ykkC
541196-541514 (+)
sugE
ECL_00551
Single gene
DOOR ID:
2840965
ECL_00551
(sugE)
View Structure
5
655827-655941
(+)
Mg sensor
656033-658748 (+)
ECL_00660
Magnesium-transporting ATPase MgtA
ECL_00660
Single gene
DOOR ID:
2841016
ECL_00660
View Structure
6
864207-864307
(-)
TPP
863191-864175 (-)
ECL_00864
Thiamine transporter substrate binding subunit
ECL_00864
Operon
DOOR ID:
695336
ECL_00862,
ECL_00863,
ECL_00864
View Structure
7
1501242-1501429
(-)
yybP-ykoY
1500664-1501231 (-)
ECL_01483
Putative manganese efflux pump MntP
ECL_01483
Single gene
DOOR ID:
2841294
ECL_01483
View Structure
8
2246418-2246464
(-)
mini-ykkC
2242796-2246399 (-)
ECL_02194
ECL_02194
Operon
DOOR ID:
695591
ECL_02193,
ECL_02194
View Structure
9
2250635-2250733
(-)
ykkC-yxkD
2249518-2250577 (-)
ECL_02199
Putative ABC transporter; periplasmic protein
ECL_02199
Operon
DOOR ID:
695592
ECL_02195,
ECL_02196,
ECL_02197,
ECL_02198,
ECL_02199
View Structure
10
2679264-2679433
(+)
ykoK
2679492-2680494 (+)
ECL_02639
Putative Mg/Co/Ni transporter MgtE
ECL_02639
Single gene
DOOR ID:
2841792
ECL_02639
View Structure
11
2999589-2999723
(-)
MOCO
2998074-2998587 (-)
moaB
Molybdenum cofactor biosynthesis protein B
ECL_02952
Operon
DOOR ID:
695731
ECL_02949
(moaE)
,
ECL_02950
(moaD)
,
ECL_02951
(moaC)
,
ECL_02952
(moaB)
,
ECL_02953
(moaA)
View Structure
12
3490876-3490972
(-)
TPP
3490068-3490839 (-)
ECL_03416
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ECL_03416
Operon
DOOR ID:
695823
ECL_03414,
ECL_03415,
ECL_03416
View Structure
13
4493624-4493774
(-)
FMN
4492863-4493517 (-)
ECL_04376
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECL_04376
Single gene
DOOR ID:
2842343
ECL_04376
View Structure
14
5157401-5157577
(-)
cobalamin
5155481-5157335 (-)
ECL_05021
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
ECL_05021
Operon
DOOR ID:
696166
ECL_05020,
ECL_05021
View Structure
Genome:
Enterobacter cloacae subsp. cloacae ATCC 13047
(
NC_014121.1
);
Phylum:
Gammaproteobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"256818-256927";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"254842-256738";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"ECL_00255";i:14;s:6:"Operon";i:15;s:6:"695220";i:16;s:83:"ECL_00250(thiH);ECL_00251(thiG);ECL_00252(thiS);ECL_00253;ECL_00254;ECL_00255(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"492801-492869";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"492946-493855";i:10;s:1:"+";i:11;s:9:"ECL_00491";i:12;s:23:"Inorganic diphosphatase";i:13;s:9:"ECL_00491";i:14;s:6:"Operon";i:15;s:6:"695263";i:16;s:39:"ECL_00490;ECL_00491;ECL_00492;ECL_00493";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"502972-503046";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"501698-502022";i:10;s:1:"-";i:11;s:9:"ECL_00501";i:12;s:22:"Phosphoglyceromutase 1";i:13;s:9:"ECL_00501";i:14;s:6:"Operon";i:15;s:6:"695265";i:16;s:19:"ECL_00500;ECL_00501";i:17;s:31:"glycolytic process [GO:0006096]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"541124-541168";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"541196-541514";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:9:"ECL_00551";i:14;s:11:"Single gene";i:15;s:7:"2840965";i:16;s:15:"ECL_00551(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"655827-655941";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:13:"656033-658748";i:10;s:1:"+";i:11;s:9:"ECL_00660";i:12;s:34:"Magnesium-transporting ATPase MgtA";i:13;s:9:"ECL_00660";i:14;s:11:"Single gene";i:15;s:7:"2841016";i:16;s:9:"ECL_00660";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"864207-864307";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"863191-864175";i:10;s:1:"-";i:11;s:9:"ECL_00864";i:12;s:46:"Thiamine transporter substrate binding subunit";i:13;s:9:"ECL_00864";i:14;s:6:"Operon";i:15;s:6:"695336";i:16;s:29:"ECL_00862;ECL_00863;ECL_00864";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1501242-1501429";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1500664-1501231";i:10;s:1:"-";i:11;s:9:"ECL_01483";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:9:"ECL_01483";i:14;s:11:"Single gene";i:15;s:7:"2841294";i:16;s:9:"ECL_01483";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2246418-2246464";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2242796-2246399";i:10;s:1:"-";i:11;s:9:"ECL_02194";i:12;s:0:"";i:13;s:9:"ECL_02194";i:14;s:6:"Operon";i:15;s:6:"695591";i:16;s:19:"ECL_02193;ECL_02194";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2250635-2250733";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2249518-2250577";i:10;s:1:"-";i:11;s:9:"ECL_02199";i:12;s:45:"Putative ABC transporter; periplasmic protein";i:13;s:9:"ECL_02199";i:14;s:6:"Operon";i:15;s:6:"695592";i:16;s:49:"ECL_02195;ECL_02196;ECL_02197;ECL_02198;ECL_02199";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2679264-2679433";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2679492-2680494";i:10;s:1:"+";i:11;s:9:"ECL_02639";i:12;s:34:"Putative Mg/Co/Ni transporter MgtE";i:13;s:9:"ECL_02639";i:14;s:11:"Single gene";i:15;s:7:"2841792";i:16;s:9:"ECL_02639";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2999589-2999723";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2998074-2998587";i:10;s:1:"-";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"ECL_02952";i:14;s:6:"Operon";i:15;s:6:"695731";i:16;s:79:"ECL_02949(moaE);ECL_02950(moaD);ECL_02951(moaC);ECL_02952(moaB);ECL_02953(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3490876-3490972";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3490068-3490839";i:10;s:1:"-";i:11;s:9:"ECL_03416";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"ECL_03416";i:14;s:6:"Operon";i:15;s:6:"695823";i:16;s:29:"ECL_03414;ECL_03415;ECL_03416";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4493624-4493774";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4492863-4493517";i:10;s:1:"-";i:11;s:9:"ECL_04376";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"ECL_04376";i:14;s:11:"Single gene";i:15;s:7:"2842343";i:16;s:9:"ECL_04376";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014121.1";i:2;s:47:"Enterobacter cloacae subsp. cloacae ATCC 13047 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5157401-5157577";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5155481-5157335";i:10;s:1:"-";i:11;s:9:"ECL_05021";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:9:"ECL_05021";i:14;s:6:"Operon";i:15;s:6:"696166";i:16;s:19:"ECL_05020;ECL_05021";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}