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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
587513-587639
(+)
ZMP-ZTP
587817-589065 (+)
BC1002_0530
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
BC1002_0530
Operon
DOOR ID:
693980
BC1002_0530,
BC1002_0531
View Structure
2
780847-781112
(+)
cobalamin
781200-783132 (+)
BC1002_0713
TonB-dependent receptor
BC1002_0713
Operon
DOOR ID:
694019
BC1002_0713,
BC1002_0714,
BC1002_0715,
BC1002_0716,
BC1002_0717,
BC1002_0718
View Structure
3
1024589-1024635
(+)
mini-ykkC
1024655-1024976 (+)
BC1002_0924
BC1002_0924
Single gene
DOOR ID:
2838061
BC1002_0924
View Structure
4
1284628-1284689
(-)
fluoride
1284174-1284555 (-)
BC1002_1152
Putative fluoride ion transporter CrcB
BC1002_1152
Single gene
DOOR ID:
2838158
BC1002_1152
View Structure
5
2201077-2201194
(+)
TPP
2201282-2203214 (+)
BC1002_1962
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BC1002_1962
Single gene
DOOR ID:
2838556
BC1002_1962
View Structure
6
2553759-2553971
(+)
yybP-ykoY
2554556-2555240 (-)
BC1002_2282
Putative transmembrane lipoprotein
BC1002_2282
Single gene
DOOR ID:
2838694
BC1002_2282
View Structure
7
2855235-2855334
(+)
ykkC-yxkD
2855391-2856462 (+)
BC1002_2561
ABC transporter periplasmic binding protein; urea carboxylase region
BC1002_2561
Operon
DOOR ID:
694349
BC1002_2561,
BC1002_2562,
BC1002_2563,
BC1002_2564,
BC1002_2565,
BC1002_2566,
BC1002_2567,
BC1002_2568
View Structure
8
2859630-2859676
(+)
mini-ykkC
2859697-2863297 (+)
BC1002_2567
BC1002_2567
Operon
DOOR ID:
694349
BC1002_2561,
BC1002_2562,
BC1002_2563,
BC1002_2564,
BC1002_2565,
BC1002_2566,
BC1002_2567,
BC1002_2568
View Structure
9
2889885-2890068
(-)
FMN
2889018-2889738 (-)
BC1002_2592
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BC1002_2592
Single gene
DOOR ID:
2838853
BC1002_2592
View Structure
10
2931418-2931514
(-)
glycine
2930219-2930714 (-)
BC1002_2633
Gluconokinase (2)
BC1002_2633
Operon
DOOR ID:
694362
BC1002_2633,
BC1002_2634
View Structure
11
3142091-3142214
(-)
TPP
3140738-3141869 (-)
BC1002_2833
FAD dependent oxidoreductase
BC1002_2833
Operon
DOOR ID:
694405
BC1002_2832,
BC1002_2833
View Structure
12
3290314-3290448
(-)
SAH
3288861-3290280 (-)
BC1002_2974
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BC1002_2974
Single gene
DOOR ID:
2838985
BC1002_2974
View Structure
13
3403719-3403821
(+)
glycine
3404081-3405200 (+)
BC1002_3085
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BC1002_3085
Operon
DOOR ID:
694458
BC1002_3085,
BC1002_3086,
BC1002_3087
View Structure
14
3403841-3404001
(+)
glycine
3404081-3405200 (+)
BC1002_3085
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BC1002_3085
Operon
DOOR ID:
694458
BC1002_3085,
BC1002_3086,
BC1002_3087
View Structure
Genome:
Burkholderia sp. CCGE1002 chromosome I
(
NC_014117.1
);
Phylum:
Betaproteobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"587513-587639";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"587817-589065";i:10;s:1:"+";i:11;s:11:"BC1002_0530";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:11:"BC1002_0530";i:14;s:6:"Operon";i:15;s:6:"693980";i:16;s:23:"BC1002_0530;BC1002_0531";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"780847-781112";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"781200-783132";i:10;s:1:"+";i:11;s:11:"BC1002_0713";i:12;s:23:"TonB-dependent receptor";i:13;s:11:"BC1002_0713";i:14;s:6:"Operon";i:15;s:6:"694019";i:16;s:71:"BC1002_0713;BC1002_0714;BC1002_0715;BC1002_0716;BC1002_0717;BC1002_0718";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1024589-1024635";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1024655-1024976";i:10;s:1:"+";i:11;s:11:"BC1002_0924";i:12;s:0:"";i:13;s:11:"BC1002_0924";i:14;s:11:"Single gene";i:15;s:7:"2838061";i:16;s:11:"BC1002_0924";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1284628-1284689";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1284174-1284555";i:10;s:1:"-";i:11;s:11:"BC1002_1152";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:11:"BC1002_1152";i:14;s:11:"Single gene";i:15;s:7:"2838158";i:16;s:11:"BC1002_1152";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2201077-2201194";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2201282-2203214";i:10;s:1:"+";i:11;s:11:"BC1002_1962";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"BC1002_1962";i:14;s:11:"Single gene";i:15;s:7:"2838556";i:16;s:11:"BC1002_1962";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2553759-2553971";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2554556-2555240";i:10;s:1:"-";i:11;s:11:"BC1002_2282";i:12;s:34:"Putative transmembrane lipoprotein";i:13;s:11:"BC1002_2282";i:14;s:11:"Single gene";i:15;s:7:"2838694";i:16;s:11:"BC1002_2282";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2855235-2855334";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2855391-2856462";i:10;s:1:"+";i:11;s:11:"BC1002_2561";i:12;s:68:"ABC transporter periplasmic binding protein; urea carboxylase region";i:13;s:11:"BC1002_2561";i:14;s:6:"Operon";i:15;s:6:"694349";i:16;s:95:"BC1002_2561;BC1002_2562;BC1002_2563;BC1002_2564;BC1002_2565;BC1002_2566;BC1002_2567;BC1002_2568";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2859630-2859676";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2859697-2863297";i:10;s:1:"+";i:11;s:11:"BC1002_2567";i:12;s:0:"";i:13;s:11:"BC1002_2567";i:14;s:6:"Operon";i:15;s:6:"694349";i:16;s:95:"BC1002_2561;BC1002_2562;BC1002_2563;BC1002_2564;BC1002_2565;BC1002_2566;BC1002_2567;BC1002_2568";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2889885-2890068";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2889018-2889738";i:10;s:1:"-";i:11;s:11:"BC1002_2592";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"BC1002_2592";i:14;s:11:"Single gene";i:15;s:7:"2838853";i:16;s:11:"BC1002_2592";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2931418-2931514";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2930219-2930714";i:10;s:1:"-";i:11;s:11:"BC1002_2633";i:12;s:17:"Gluconokinase (2)";i:13;s:11:"BC1002_2633";i:14;s:6:"Operon";i:15;s:6:"694362";i:16;s:23:"BC1002_2633;BC1002_2634";i:17;s:43:"carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3142091-3142214";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3140738-3141869";i:10;s:1:"-";i:11;s:11:"BC1002_2833";i:12;s:28:"FAD dependent oxidoreductase";i:13;s:11:"BC1002_2833";i:14;s:6:"Operon";i:15;s:6:"694405";i:16;s:23:"BC1002_2832;BC1002_2833";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3290314-3290448";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3288861-3290280";i:10;s:1:"-";i:11;s:11:"BC1002_2974";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:11:"BC1002_2974";i:14;s:11:"Single gene";i:15;s:7:"2838985";i:16;s:11:"BC1002_2974";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3403719-3403821";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3404081-3405200";i:10;s:1:"+";i:11;s:11:"BC1002_3085";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"BC1002_3085";i:14;s:6:"Operon";i:15;s:6:"694458";i:16;s:35:"BC1002_3085;BC1002_3086;BC1002_3087";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_014117.1";i:2;s:38:"Burkholderia sp. CCGE1002 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3403841-3404001";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3404081-3405200";i:10;s:1:"+";i:11;s:11:"BC1002_3085";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"BC1002_3085";i:14;s:6:"Operon";i:15;s:6:"694458";i:16;s:35:"BC1002_3085;BC1002_3086;BC1002_3087";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}}