Genome: Bacillus megaterium DSM 319 (NC_014103.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 166311-166483 (+)glmS166533-168336 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		BMD_0192Single gene

DOOR ID: 2834183		BMD_0192 (glmS) View Structure
2 230059-230160 (+)purine230283-231813 (+)BMD_0265

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		BMD_0265Single gene

DOOR ID: 2834201		BMD_0265 View Structure
3 231911-232012 (+)purine232145-233471 (+)pbuG

Hypoxanthine/guanine permease		BMD_0266Single gene

DOOR ID: 2834202		BMD_0266 (pbuG) View Structure
4 239188-239289 (+)purine239418-239907 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		BMD_0271Operon

DOOR ID: 692375		BMD_0271 (purE),
BMD_0272 (purK),
BMD_0273 (purB),
BMD_0274 (purC),
BMD_0275 (purS),
BMD_0276 (purQ),
BMD_0277 (purL),
BMD_0278 (purF),
BMD_0279 (purM),
BMD_0280 (purN),
BMD_0281 (purH),
BMD_0282 (purD)		 View Structure
5 303860-304043 (+)cobalamin304175-304973 (+)BMD_0328

Nickel/cobalt efflux system		BMD_0328Single gene

DOOR ID: 2834223		BMD_0328 View Structure
6 353033-353134 (-)purine351212-352949 (-)ade

Adenine deaminase (Adenase) (Adenine aminase) 		BMD_0370Single gene

DOOR ID: 2834254		BMD_0370 (ade) View Structure
7 371763-371843 (+)glycine372001-373354 (+)BMD_0391

D-serine/D-alanine/glycine transporter		BMD_0391Single gene

DOOR ID: 2834268		BMD_0391 View Structure
8 417613-417727 (-)TPP415729-417499 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		BMD_0450Single gene

DOOR ID: 2834298		BMD_0450 (thiC) View Structure
9 419654-419793 (+)ydaO-yuaA419899-421159 (+)BMD_0453

Proton/sodium-glutamate symport protein		BMD_0453Single gene

DOOR ID: 2834301		BMD_0453 View Structure
10 472802-472846 (+)PreQ1472855-473344 (+)BMD_0502

BMD_0502Single gene

DOOR ID: 2834324		BMD_0502 View Structure
11 481110-481300 (+)cobalamin481443-482985 (+)BMD_0512

Putative oligopeptide ABC transporter; oligopetide-binding protein		BMD_0512Single gene

DOOR ID: 2834330		BMD_0512 View Structure
12 520003-520104 (+)TPP520225-520849 (+)BMD_0551

Putative thiamine-phosphate pyrophosphorylase 		BMD_0551Operon

DOOR ID: 692410		BMD_0551,
BMD_0552 (thiO),
BMD_0553 (thiS),
BMD_0554 (thiG),
BMD_0555 (thiF),
BMD_0556 (thiD)		 View Structure
13 785423-785501 (+)ZMP-ZTP785557-787153 (+)BMD_0809

Amino acid permease		BMD_0809Single gene

DOOR ID: 2834466		BMD_0809 View Structure
14 805287-805388 (+)purine805526-806720 (+)BMD_0826

Nucleoside permease		BMD_0826Single gene

DOOR ID: 2834477		BMD_0826 View Structure
15 867456-867558 (+)TPP867672-868950 (+)BMD_0884

Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase 		BMD_0884Operon

DOOR ID: 692471		BMD_0884,
BMD_0885,
BMD_0886,
BMD_0887,
BMD_0888		 View Structure
16 928417-928516 (+)SAM928759-929389 (-)BMD_0946

BMD_0946Operon

DOOR ID: 692484		BMD_0946,
BMD_0947		 View Structure
17 971604-971708 (-)ykkC-yxkD970818-971556 (-)BMD_0984

Urea carboxylase-associated protein 2		BMD_0984Operon

DOOR ID: 692491		BMD_0981 (atzF),
BMD_0982 (uca),
BMD_0983,
BMD_0984		 View Structure
18 973246-973348 (-)ykkC-yxkD971832-973182 (-)BMD_0985

Amino acid permease		BMD_0985Single gene

DOOR ID: 2834534		BMD_0985 View Structure
19 973561-973662 (+)purine974168-975497 (+)BMD_0986

Amidohydrolase (Metal dependent) 		BMD_0986Single gene

DOOR ID: 2834535		BMD_0986 View Structure
20 973648-973764 (+)ykkC-yxkD974168-975497 (+)BMD_0986

Amidohydrolase (Metal dependent) 		BMD_0986Single gene

DOOR ID: 2834535		BMD_0986 View Structure
21 1084518-1084610 (-)c-di-GMP-I1083536-1084328 (+)BMD_1105

Histidinol-phosphatase (HolPase) 		BMD_1105single gene

DOOR ID: 2834588		BMD_1105 View Structure
22 1174701-1174802 (+)SAM1174870-1175113 (+)BMD_1185

BMD_1185Single gene

DOOR ID: 2834638		BMD_1185 View Structure
23 1200240-1200334 (+)yybP-ykoY1200430-1201246 (+)BMD_1208

Integral membrane protein; TerC family		BMD_1208Single gene

DOOR ID: 2834652		BMD_1208 View Structure
24 1223543-1223693 (-)SAM1222234-1223407 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		BMD_1231Operon

DOOR ID: 692535		BMD_1230 (mtnA),
BMD_1231 (mtnK)		 View Structure
25 1225983-1226089 (+)SAM1226169-1227414 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		BMD_1234Operon

DOOR ID: 692536		BMD_1234 (mtnW),
BMD_1235 (mtnX),
BMD_1236 (mtnB),
BMD_1237 (mtnD)		 View Structure
26 1248553-1248596 (+)PreQ11248826-1249492 (+)queC

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		BMD_1255Operon

DOOR ID: 692538		BMD_1255 (queC),
BMD_1256 (queD),
BMD_1257 (queE)		 View Structure
27 1266411-1266517 (-)SAM1264464-1266303 (-)yitJ

Homocysteine S-methyltransferase/5;10-methylenetetrahydrofolate reductase (0)		BMD_1274Operon

DOOR ID: 692542		BMD_1273 (metH),
BMD_1274 (yitJ)		 View Structure
28 1267999-1268149 (+)FMN1268192-1268447 (+)BMD_1276

BMD_1276Operon

DOOR ID: 692543		BMD_1276,
BMD_1277 (ribE),
BMD_1278 (ribAB),
BMD_1279 (ribH)		 View Structure
29 1381362-1381479 (+)SAM1381550-1382696 (+)metB

Cystathionine gamma-synthase (9)		BMD_1396Operon

DOOR ID: 692561		BMD_1396 (metB),
BMD_1397 (metC)		 View Structure
30 1413696-1413797 (+)purine1413900-1414494 (+)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		BMD_1432Operon

DOOR ID: 692569		BMD_1432 (xpt),
BMD_1433		 View Structure
31 1566853-1566969 (+)SAM1567049-1567868 (+)met

Lipoprotein		BMD_1578Operon

DOOR ID: 692595		BMD_1578 (met),
BMD_1579 (metN),
BMD_1580 (met)		 View Structure
32 1681125-1681303 (+)lysine1681430-1682318 (+)dapA

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		BMD_1694Single gene

DOOR ID: 2834914		BMD_1694 (dapA) View Structure
33 1751855-1752001 (-)ydaO-yuaA1749893-1751723 (-)BMD_1758

BMD_1758Single gene

DOOR ID: 2834957		BMD_1758 View Structure
34 1950994-1951127 (+)cobalamin1951384-1952344 (+)BMD_1949

Putative metal ABC transporter; metal-binding protein		BMD_1949Single gene

DOOR ID: 2835076		BMD_1949 View Structure
35 2098160-2098257 (-)TPP2097374-2098064 (-)BMD_2097

Aminopyrimidine aminohydrolase 		BMD_2097Single gene

DOOR ID: 2835146		BMD_2097 View Structure
36 2113201-2113309 (+)TPP2113383-2114190 (+)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		BMD_2115Operon

DOOR ID: 692685		BMD_2115 (thiM),
BMD_2116 (thiE)		 View Structure
37 2175500-2175606 (+)SAM2175690-2177001 (+)BMD_2180

Na+/H+ antiporter family		BMD_2180Single gene

DOOR ID: 2835190		BMD_2180 View Structure
38 2305254-2305436 (-)lysine2303778-2305107 (-)lysA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		BMD_2308Operon

DOOR ID: 692720		BMD_2307,
BMD_2308 (lysA)		 View Structure
39 2381849-2381927 (+)ZMP-ZTP2382095-2383295 (+)BMD_2386

Putative D-3-phosphoglycerate dehydrogenase (5)		BMD_2386Operon

DOOR ID: 692732		BMD_2386,
BMD_2387		 View Structure
40 2513551-2513651 (-)TPP2513232-2513484 (-)BMD_2524

BMD_2524Operon

DOOR ID: 692752		BMD_2523,
BMD_2524		 View Structure
41 2513826-2514010 (+)lysine2514112-2515552 (+)BMD_2525

Lysine-specific permease		BMD_2525Single gene

DOOR ID: 2835379		BMD_2525 View Structure
42 2586541-2586721 (-)cobalamin2586059-2586440 (-)cbiW

Cobalamin biosynthesis protein		BMD_2607Operon

DOOR ID: 692768		BMD_2594 (btuR),
BMD_2595 (cbiY),
BMD_2596 (cysG),
BMD_2597 (cbiA),
BMD_2598 (cbiG),
BMD_2599 (cbiF),
BMD_2600 (cbiL),
BMD_2601 (cbiET),
BMD_2602 (cbiD),
BMD_2603 (cbiC),
BMD_2604 (cbiJ),
BMD_2605 (cbiX),
BMD_2606 (cbiH),
BMD_2607 (cbiW)		 View Structure
43 2586839-2587018 (-)cobalamin2586059-2586440 (-)cbiW

Cobalamin biosynthesis protein		BMD_2607Operon

DOOR ID: 692768		BMD_2594 (btuR),
BMD_2595 (cbiY),
BMD_2596 (cysG),
BMD_2597 (cbiA),
BMD_2598 (cbiG),
BMD_2599 (cbiF),
BMD_2600 (cbiL),
BMD_2601 (cbiET),
BMD_2602 (cbiD),
BMD_2603 (cbiC),
BMD_2604 (cbiJ),
BMD_2605 (cbiX),
BMD_2606 (cbiH),
BMD_2607 (cbiW)		 View Structure
44 2939362-2939542 (-)cobalamin2937743-2939270 (-)cbiP

Cobyric acid synthase		BMD_2964Single gene

DOOR ID: 2835594		BMD_2964 (cbiP) View Structure
45 3420334-3420523 (-)cobalamin3417890-3420185 (-)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		BMD_3527Single gene

DOOR ID: 2835886		BMD_3527 (metE) View Structure
46 3420603-3420713 (-)SAM3417890-3420185 (-)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		BMD_3527Single gene

DOOR ID: 2835886		BMD_3527 (metE) View Structure
47 3654815-3654921 (-)SAM3654076-3654739 (-)BMD_3784

Oxidoreductase molybdopterin binding domain protein		BMD_3784Single gene

DOOR ID: 2836036		BMD_3784 View Structure
48 3754322-3754466 (-)ydaO-yuaA3753537-3754197 (-)ktrA

Potassium uptake protein		BMD_3895Operon

DOOR ID: 692985		 View Structure
49 3810679-3810780 (-)SAM3810270-3810609 (-)BMD_3952

BMD_3952Single gene

DOOR ID: 2836129		BMD_3952 View Structure
50 3935089-3935231 (-)ydaO-yuaA3933094-3934921 (-)BMD_4083

Amino acid permease		BMD_4083Single gene

DOOR ID: 2836193		BMD_4083 View Structure
51 4207400-4207542 (-)FMN4206669-4207245 (-)fmnP

Riboflavin transporter		BMD_4350Single gene

DOOR ID: 2836261		BMD_4350 (fmnP) View Structure
52 4324286-4324378 (-)glycine4322972-4324073 (-)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		BMD_4471Operon

DOOR ID: 693103		BMD_4469 (gcvPB),
BMD_4470 (gcvPA),
BMD_4471 (gcvT)		 View Structure
53 4550525-4550702 (-)lysine4549150-4550383 (-)lysC

Aspartokinase 		BMD_4713Single gene

DOOR ID: 2836377		BMD_4713 (lysC) View Structure
54 4563576-4563727 (-)glutamine4560545-4562909 (-)mutS

Endonuclease MutS2 		BMD_4723Operon

DOOR ID: 693159		BMD_4723 (mutS),
BMD_4724 (polX)		 View Structure
55 4689335-4689452 (-)SAM4687999-4689202 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		BMD_4847Single gene

DOOR ID: 2836444		BMD_4847 (metK) View Structure
56 4709682-4709868 (-)cobalamin4707305-4709549 (-)nrdE

Ribonucleoside-diphosphate reductase 		BMD_4872Operon

DOOR ID: 693190		BMD_4871 (nrdF),
BMD_4872 (nrdE)		 View Structure
57 4743980-4744082 (-)SAM4743011-4743725 (-)cysH

Phosphoadenosine phosphosulfate reductase (3'-phosphoadenylylsulfate reductase) (PAPS reductase; thioredoxin dependent) (PAPS sulfotransferase) (PAdoPS reductase)		BMD_4918Operon

DOOR ID: 693193		BMD_4912 (sirC),
BMD_4913 (sirB),
BMD_4914 (sirA),
BMD_4915 (cysC),
BMD_4916 (sat),
BMD_4917 (cysP),
BMD_4918 (cysH)		 View Structure
58 4800779-4800886 (-)SAM4799621-4800647 (-)metN

Methionine import ATP-binding protein MetN 		BMD_4984Operon

DOOR ID: 693200		BMD_4982 (metQ),
BMD_4983 (metP),
BMD_4984 (metN)		 View Structure