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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
485139-485241
(+)
TPP
485412-486051 (+)
thiE
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
PRU_0400
Operon
DOOR ID:
688486
PRU_0399
(thiS)
,
PRU_0400
(thiE)
,
PRU_0401
(thiG)
,
PRU_0402
(thiC)
,
PRU_0403,
PRU_0404
(thiH)
,
PRU_0405,
PRU_0406
(thiD)
View Structure
2
1274760-1274950
(-)
cobalamin
1272590-1274705 (-)
PRU_1085
Transporter; outer membrane receptor (OMR) family
PRU_1085
Operon
DOOR ID:
688628
PRU_1080
(cobD)
,
PRU_1081
(cobQ)
,
PRU_1082
(cobJH)
,
PRU_1083,
PRU_1084,
PRU_1085
View Structure
3
2197550-2197736
(-)
cobalamin
2196621-2197419 (+)
PRU_1817
D-alanyl-D-alanine dipeptidase (D-Ala-D-Ala dipeptidase) (2)
PRU_1817
Single gene
DOOR ID:
2827921
PRU_1817
View Structure
4
3005963-3006058
(+)
TPP
3006097-3008449 (+)
PRU_2488
Transporter; outer membrane receptor (OMR) family
PRU_2488
Operon
DOOR ID:
688937
PRU_2488,
PRU_2489
View Structure
5
3026672-3026890
(+)
cobalamin
3026975-3028946 (+)
PRU_2506
Transporter; outer membrane receptor (OMR) family
PRU_2506
Single gene
DOOR ID:
2828074
PRU_2506
View Structure
6
3450485-3450670
(+)
cobalamin
3451341-3451836 (-)
PRU_2796
Flavodoxin
PRU_2796
Operon
DOOR ID:
689023
PRU_2796,
PRU_2797
View Structure
Genome:
Prevotella ruminicola Bryant 23
(
NC_014033.1
);
Phylum:
Bacteroidetes/Chlorobi group
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