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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
186807-186935
(+)
cobalamin
187436-188411 (+)
nrdB
Ribonucleoside-diphosphate reductase beta subunit
SRM_00153
Single gene
DOOR ID:
2826083
SRM_00153
(nrdB)
View Structure
2
444508-444619
(+)
cobalamin
444837-447564 (+)
nrdB
Vitamin B12-dependent ribonucleotide reductase
SRM_00377
Single gene
DOOR ID:
2826197
SRM_00377
(nrdB)
View Structure
3
488391-488494
(-)
TPP
487607-488321 (-)
tenA
Aminopyrimidine aminohydrolase
SRM_00411
Single gene
DOOR ID:
2826213
SRM_00411
(tenA)
View Structure
4
685802-685911
(+)
SAH
686654-687593 (-)
acrR
Transcriptional regulator; TetR family protein
SRM_00557
Operon
DOOR ID:
687871
SRM_00556
(sepC)
,
SRM_00557
(acrR)
View Structure
5
688232-688347
(+)
SAM
688472-689885 (+)
met17
O-acetylhomoserine sulfhydrylase (9)
SRM_00559
Single gene
DOOR ID:
2826292
SRM_00559
(met17)
View Structure
6
1006134-1006256
(-)
TPP
1004600-1005110 (-)
SRM_00877
SRM_00877
Operon
DOOR ID:
687934
SRM_00873,
SRM_00874,
SRM_00875,
SRM_00876,
SRM_00877,
SRM_00878
(phnD)
View Structure
7
1208229-1208581
(-)
cobalamin
1206035-1208012 (-)
btuB
Vitamin B12 transporter btuB [Precursor]
SRM_01055
Operon
DOOR ID:
687969
SRM_01054,
SRM_01055
(btuB)
View Structure
8
1510112-1510215
(+)
TPP
1510226-1511048 (+)
fabG
3-oxoacyl-[acyl-carrier protein] reductase (00)
SRM_01333
Operon
DOOR ID:
688028
SRM_01333
(fabG)
,
SRM_01334
View Structure
9
1522750-1522868
(-)
SAM
1521426-1522653 (-)
cysA
Putative cystathionine gamma-lyase
SRM_01342
Single gene
DOOR ID:
2826658
SRM_01342
(cysA)
View Structure
10
3569937-3569995
(-)
glutamine
3566651-3568991 (+)
SRM_03048
Methyl-accepting chemotaxis protein
SRM_03048
Single gene
DOOR ID:
2827434
SRM_03048
View Structure
Genome:
Salinibacter ruber M8
(
NC_014032.1
);
Phylum:
Bacteroidetes/Chlorobi group
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DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014032.1";i:2;s:22:"Salinibacter ruber M8 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"488391-488494";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"487607-488321";i:10;s:1:"-";i:11;s:4:"tenA";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:9:"SRM_00411";i:14;s:11:"Single gene";i:15;s:7:"2826213";i:16;s:15:"SRM_00411(tenA)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014032.1";i:2;s:22:"Salinibacter ruber M8 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"685802-685911";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"686654-687593";i:10;s:1:"-";i:11;s:4:"acrR";i:12;s:46:"Transcriptional regulator; TetR family protein";i:13;s:9:"SRM_00557";i:14;s:6:"Operon";i:15;s:6:"687871";i:16;s:31:"SRM_00556(sepC);SRM_00557(acrR)";i:17;s:107:"negative regulation of transcription; 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