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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
420557-420603
(+)
mini-ykkC
421101-421458 (-)
frdD
YPZ3_0357
Operon
DOOR ID:
687134
YPZ3_0357
(frdD)
,
YPZ3_0358
(frdC)
,
YPZ3_0359
(frdB)
,
YPZ3_0360
(frdA)
View Structure
2
620555-620692
(-)
TPP
619487-620534 (-)
YPZ3_0507
YPZ3_0507
Operon
DOOR ID:
687163
YPZ3_0505,
YPZ3_0506
(cysU)
,
YPZ3_0507
View Structure
3
769221-769410
(+)
FMN
769651-770305 (+)
ribB
YPZ3_0616
Single gene
DOOR ID:
2824486
YPZ3_0616
(ribB)
View Structure
4
1355929-1356075
(+)
MOCO
1356190-1357042 (+)
moaA
YPZ3_1050
Operon
DOOR ID:
687269
YPZ3_1050
(moaA)
,
YPZ3_1051
(moaC)
View Structure
5
2509982-2510181
(+)
yybP-ykoY
2510191-2510761 (+)
YPZ3_1964
YPZ3_1964
Single gene
DOOR ID:
2825145
YPZ3_1964
View Structure
6
2974751-2974814
(-)
fluoride
2974266-2974650 (-)
ccrB
YPZ3_2292
Single gene
DOOR ID:
2825326
YPZ3_2292
(ccrB)
View Structure
7
3184036-3184140
(+)
TPP
3184263-3185064 (+)
thiD
YPZ3_2465
Single gene
DOOR ID:
2825396
YPZ3_2465
(thiD)
View Structure
8
4237137-4237262
(+)
TPP
4237395-4239441 (+)
thiC
YPZ3_3299
Operon
DOOR ID:
687696
YPZ3_3299
(thiC)
,
YPZ3_3300,
YPZ3_3301
(thiF)
View Structure
9
4439379-4439641
(-)
cobalamin
4437414-4439310 (-)
YPZ3_3451
YPZ3_3451
Single gene
DOOR ID:
2825839
YPZ3_3451
View Structure
Genome:
Yersinia pestis Z176003
(
NC_014029.1
);
Phylum:
Gammaproteobacteria
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