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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
307722-307965
(-)
cobalamin
305558-307544 (-)
SJA_C2-02550
TonB-dependent receptor-like protein
SJA_C2-02550
Single gene
DOOR ID:
2821269
SJA_C2-02550
View Structure
2
376989-377219
(+)
cobalamin
377370-378444 (+)
nixA
Nickel/cobalt efflux system
SJA_C2-03050
Operon
DOOR ID:
685818
SJA_C2-03050
(nixA)
,
SJA_C2-03060
(cobW)
,
SJA_C2-03070
(cobN)
,
SJA_C2-03080
(cobO)
,
SJA_C2-03090
(bluB)
View Structure
3
384609-384826
(+)
cobalamin
384998-386063 (+)
cobG
Cobalamin synthesis protein CobG (7)
SJA_C2-03100
Operon
DOOR ID:
685819
SJA_C2-03100
(cobG)
,
SJA_C2-03110
(cobH)
,
SJA_C2-03120
(cobI)
,
SJA_C2-03130
(cobJ)
View Structure
4
412333-412524
(-)
cobalamin
411733-412141 (-)
cobT
SJA_C2-03350
Operon
DOOR ID:
685824
SJA_C2-03290
(cobU/cobP)
,
SJA_C2-03300
(cobD)
,
SJA_C2-03310
(cobC)
,
SJA_C2-03320
(cobS)
,
SJA_C2-03330,
SJA_C2-03340
(cobT)
,
SJA_C2-03350
View Structure
Genome:
Sphingobium japonicum UT26S chromosome II
(
NC_014013.1
);
Phylum:
Alphaproteobacteria
a:5:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014013.1";i:2;s:41:"Sphingobium japonicum UT26S chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"307722-307965";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"305558-307544";i:10;s:1:"-";i:11;s:12:"SJA_C2-02550";i:12;s:36:"TonB-dependent receptor-like protein";i:13;s:12:"SJA_C2-02550";i:14;s:11:"Single gene";i:15;s:7:"2821269";i:16;s:12:"SJA_C2-02550";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014013.1";i:2;s:41:"Sphingobium japonicum UT26S chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"376989-377219";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"377370-378444";i:10;s:1:"+";i:11;s:4:"nixA";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:12:"SJA_C2-03050";i:14;s:6:"Operon";i:15;s:6:"685818";i:16;s:94:"SJA_C2-03050(nixA);SJA_C2-03060(cobW);SJA_C2-03070(cobN);SJA_C2-03080(cobO);SJA_C2-03090(bluB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014013.1";i:2;s:41:"Sphingobium japonicum UT26S chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"384609-384826";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"384998-386063";i:10;s:1:"+";i:11;s:4:"cobG";i:12;s:36:"Cobalamin synthesis protein CobG (7)";i:13;s:12:"SJA_C2-03100";i:14;s:6:"Operon";i:15;s:6:"685819";i:16;s:75:"SJA_C2-03100(cobG);SJA_C2-03110(cobH);SJA_C2-03120(cobI);SJA_C2-03130(cobJ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014013.1";i:2;s:41:"Sphingobium japonicum UT26S chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"412333-412524";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"411733-412141";i:10;s:1:"-";i:11;s:4:"cobT";i:12;s:0:"";i:13;s:12:"SJA_C2-03350";i:14;s:6:"Operon";i:15;s:6:"685824";i:16;s:125:"SJA_C2-03290(cobU/cobP);SJA_C2-03300(cobD);SJA_C2-03310(cobC);SJA_C2-03320(cobS);SJA_C2-03330;SJA_C2-03340(cobT);SJA_C2-03350";i:17;s:0:"";i:18;s:15:"View Structure ";}}