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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
142954-143060
(+)
SAM
143151-144360 (+)
Amico_0147
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Amico_0147
Single gene
DOOR ID:
2818557
Amico_0147
View Structure
2
271761-271867
(+)
TPP
271919-272765 (+)
Amico_0255
Phosphomethylpyrimidine kinase
Amico_0255
Operon
DOOR ID:
684687
Amico_0255,
Amico_0256,
Amico_0257
View Structure
3
277820-277928
(-)
TPP
277261-277765 (-)
Amico_0262
Proton-coupled thiamine transporter YuaJ
Amico_0262
Operon
DOOR ID:
684688
Amico_0258,
Amico_0259,
Amico_0260,
Amico_0261,
Amico_0262
View Structure
4
350233-350420
(-)
cobalamin
348279-350112 (-)
Amico_0333
TonB-dependent receptor
Amico_0333
Single gene
DOOR ID:
2818600
Amico_0333
View Structure
5
495019-495096
(+)
Nico
495185-497786 (+)
Amico_0462
ATPase; P-type (Transporting); HAD superfamily; subfamily IC
Amico_0462
Single gene
DOOR ID:
2818640
Amico_0462
View Structure
6
760796-760953
(+)
glmS
760984-762817 (+)
Amico_0741
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Amico_0741
Single gene
DOOR ID:
2818703
Amico_0741
View Structure
7
1428643-1428760
(-)
glycine
1428132-1428540 (-)
Amico_1399
GrdX protein
Amico_1399
Single gene
DOOR ID:
2818828
Amico_1399
View Structure
8
1728467-1728564
(-)
THF
1727856-1728387 (-)
Amico_1685
Amico_1685
Single gene
DOOR ID:
2818883
Amico_1685
View Structure
9
1958862-1959030
(-)
cobalamin
1958235-1958730 (-)
Amico_1894
Amico_1894
Single gene
DOOR ID:
2818929
Amico_1894
View Structure
Genome:
Aminobacterium colombiense DSM 12261
(
NC_014011.1
);
Phylum:
Synergistia
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