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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1040864-1041073
(+)
cobalamin
1041187-1043119 (+)
Nhal_1054
TonB-dependent receptor
Nhal_1054
Single gene
DOOR ID:
2808891
Nhal_1054
View Structure
2
2169910-2170016
(+)
glutamine
2170160-2170778 (+)
Nhal_2093
Response regulator receiver
Nhal_2093
Operon
DOOR ID:
679472
Nhal_2092,
Nhal_2093
View Structure
3
3391739-3391824
(+)
c-di-GMP-I
3391884-3393045 (+)
Nhal_3292
Fibronectin type III domain protein
Nhal_3292
single gene
DOOR ID:
2809633
Nhal_3292
View Structure
4
3576127-3576223
(+)
TPP
3576279-3578157 (+)
Nhal_3467
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Nhal_3467
Single gene
DOOR ID:
2809695
Nhal_3467
View Structure
Genome:
Nitrosococcus halophilus Nc4
(
NC_013960.1
);
Phylum:
Gammaproteobacteria
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