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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
82172-82284
(+)
ykkC-yxkD
82337-82517 (+)
Slit_0077
Slit_0077
Operon
DOOR ID:
678450
Slit_0077,
Slit_0078,
Slit_0079,
Slit_0080
View Structure
2
196039-196130
(-)
SAH
194605-196024 (-)
Slit_0176
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Slit_0176
Operon
DOOR ID:
678478
Slit_0173,
Slit_0174,
Slit_0175,
Slit_0176,
Slit_0177
View Structure
3
1136910-1137012
(+)
c-di-GMP-I
1137226-1137523 (+)
Slit_1158
Histone family protein DNA-binding protein
Slit_1158
single gene
DOOR ID:
2808123
Slit_1158
View Structure
4
1143960-1144044
(+)
c-di-GMP-I
1144222-1144921 (+)
Slit_1165
Ankyrin
Slit_1165
single gene
DOOR ID:
2808127
Slit_1165
View Structure
5
1575784-1575864
(-)
c-di-GMP-I
1575149-1575653 (-)
Slit_1567
Hemerythrin-like metal-binding protein
Slit_1567
single gene
DOOR ID:
2808251
Slit_1567
View Structure
6
2135735-2135808
(-)
sam-alpha
2134498-2135665 (-)
Slit_2107
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Slit_2107
Operon
DOOR ID:
678871
Slit_2103,
Slit_2104,
Slit_2105,
Slit_2106,
Slit_2107
View Structure
7
2226794-2226883
(+)
c-di-GMP-I
2226986-2228363 (+)
Slit_2198
Adenylate/guanylate cyclase
Slit_2198
single gene
DOOR ID:
2808387
Slit_2198
View Structure
8
2715989-2716194
(-)
cobalamin
2713859-2715872 (-)
Slit_2681
TonB-dependent receptor plug
Slit_2681
Single gene
DOOR ID:
2808503
Slit_2681
View Structure
9
2873674-2873768
(+)
glycine
2873857-2874943 (+)
Slit_2859
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Slit_2859
Operon
DOOR ID:
679032
Slit_2859,
Slit_2860,
Slit_2861,
Slit_2862,
Slit_2863,
Slit_2864
View Structure
10
2930639-2930729
(+)
TPP
2930755-2932627 (+)
Slit_2915
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Slit_2915
Single gene
DOOR ID:
2808556
Slit_2915
View Structure
Genome:
Sideroxydans lithotrophicus ES-1
(
NC_013959.1
);
Phylum:
Betaproteobacteria
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S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013959.1";i:2;s:33:"Sideroxydans lithotrophicus ES-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1136910-1137012";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1137226-1137523";i:10;s:1:"+";i:11;s:9:"Slit_1158";i:12;s:42:"Histone family protein DNA-binding protein";i:13;s:9:"Slit_1158";i:14;s:11:"single gene";i:15;s:7:"2808123";i:16;s:9:"Slit_1158";i:17;s:36:"chromosome condensation [GO:0030261]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013959.1";i:2;s:33:"Sideroxydans lithotrophicus ES-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1143960-1144044";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1144222-1144921";i:10;s:1:"+";i:11;s:9:"Slit_1165";i:12;s:7:"Ankyrin";i:13;s:9:"Slit_1165";i:14;s:11:"single gene";i:15;s:7:"2808127";i:16;s:9:"Slit_1165";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013959.1";i:2;s:33:"Sideroxydans lithotrophicus ES-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1575784-1575864";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1575149-1575653";i:10;s:1:"-";i:11;s:9:"Slit_1567";i:12;s:38:"Hemerythrin-like metal-binding protein";i:13;s:9:"Slit_1567";i:14;s:11:"single gene";i:15;s:7:"2808251";i:16;s:9:"Slit_1567";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013959.1";i:2;s:33:"Sideroxydans lithotrophicus ES-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2135735-2135808";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"2134498-2135665";i:10;s:1:"-";i:11;s:9:"Slit_2107";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:9:"Slit_2107";i:14;s:6:"Operon";i:15;s:6:"678871";i:16;s:49:"Slit_2103;Slit_2104;Slit_2105;Slit_2106;Slit_2107";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013959.1";i:2;s:33:"Sideroxydans lithotrophicus ES-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2226794-2226883";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2226986-2228363";i:10;s:1:"+";i:11;s:9:"Slit_2198";i:12;s:27:"Adenylate/guanylate cyclase";i:13;s:9:"Slit_2198";i:14;s:11:"single gene";i:15;s:7:"2808387";i:16;s:9:"Slit_2198";i:17;s:99:"cyclic nucleotide biosynthetic process [GO:0009190]; intracellular signal transduction [GO:0035556]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013959.1";i:2;s:33:"Sideroxydans lithotrophicus ES-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2715989-2716194";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2713859-2715872";i:10;s:1:"-";i:11;s:9:"Slit_2681";i:12;s:28:"TonB-dependent receptor plug";i:13;s:9:"Slit_2681";i:14;s:11:"Single gene";i:15;s:7:"2808503";i:16;s:9:"Slit_2681";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013959.1";i:2;s:33:"Sideroxydans lithotrophicus ES-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2873674-2873768";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2873857-2874943";i:10;s:1:"+";i:11;s:9:"Slit_2859";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Slit_2859";i:14;s:6:"Operon";i:15;s:6:"679032";i:16;s:59:"Slit_2859;Slit_2860;Slit_2861;Slit_2862;Slit_2863;Slit_2864";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013959.1";i:2;s:33:"Sideroxydans lithotrophicus ES-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2930639-2930729";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2930755-2932627";i:10;s:1:"+";i:11;s:9:"Slit_2915";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Slit_2915";i:14;s:11:"Single gene";i:15;s:7:"2808556";i:16;s:9:"Slit_2915";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
