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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
263636-263734
(-)
TPP
261627-263550 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PANA_0219
Operon
DOOR ID:
1185438
PANA_0218
(thiE)
,
PANA_0219
(thiC)
View Structure
2
303887-304079
(+)
lysine
304189-305542 (+)
lysC
Aspartokinase
PANA_0247
Single gene
DOOR ID:
2806157
PANA_0247
(lysC)
View Structure
3
810216-810320
(-)
TPP
809185-810172 (-)
tbpA
TbpA
PANA_0694
Operon
DOOR ID:
1185531
PANA_0692
(thiQ)
,
PANA_0693
(thiP)
,
PANA_0694
(tbpA)
View Structure
4
1385861-1385994
(+)
MOCO
1386984-1387500 (+)
moaB
Molybdenum cofactor biosynthesis protein B
PANA_1222
Operon
DOOR ID:
1185634
PANA_1221
(moaA)
,
PANA_1222
(moaB)
,
PANA_1223
(moaC)
,
PANA_1224
(moaD)
,
PANA_1225
(moaE)
View Structure
5
1830423-1830596
(+)
ykoK
1830669-1831689 (+)
PANA_1632
PANA_1632
Single gene
DOOR ID:
2806720
PANA_1632
View Structure
6
2825920-2826016
(-)
TPP
2824300-2825167 (-)
thiD
ThiD
PANA_2525
Operon
DOOR ID:
1185879
PANA_2525
(thiD)
,
PANA_2526
(thiM)
View Structure
7
3025377-3025445
(+)
SAH
3025464-3026550 (-)
aroC
Chorismate synthase (CS) (5-enolpyruvylshikimate-3-phosphate phospholyase)
PANA_2688
Operon
DOOR ID:
1185917
PANA_2684
(yfcL)
,
PANA_2685
(yfcM)
,
PANA_2686
(yfcA)
,
PANA_2687
(mepA)
,
PANA_2688
(aroC)
,
PANA_2689
(yfcB)
View Structure
8
3768672-3768820
(-)
FMN
3767904-3768561 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
PANA_3377
Single gene
DOOR ID:
2807383
PANA_3377
(ribB)
View Structure
9
4203149-4203225
(-)
fluoride
4202677-4203112 (-)
crcB
Putative fluoride ion transporter CrcB
PANA_3797
Single gene
DOOR ID:
2807540
PANA_3797
(crcB)
View Structure
10
4251600-4251783
(-)
cobalamin
4249676-4251533 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
PANA_3834
Operon
DOOR ID:
1186141
PANA_3833
(murI)
,
PANA_3834
(btuB)
View Structure
11
4522219-4522268
(-)
mini-ykkC
4518593-4522199 (-)
PANA_4072
PANA_4072
Single gene
DOOR ID:
2807655
PANA_4072
View Structure
12
4526415-4526513
(-)
ykkC-yxkD
4525300-4526359 (-)
PANA_4077
PANA_4077
Operon
DOOR ID:
1186189
PANA_4073
(ycgI)
,
PANA_4074,
PANA_4075
(cysA)
,
PANA_4076
(tauC)
,
PANA_4077
View Structure
13
4635567-4635686
(-)
TPP
4634495-4635428 (-)
thiO
ThiO
PANA_4176
Operon
DOOR ID:
1186207
PANA_4173
(thiF)
,
PANA_4174
(thiG)
,
PANA_4175,
PANA_4176
(thiO)
View Structure
Genome:
Pantoea ananatis LMG 20103
(
NC_013956.2
);
Phylum:
Gammaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"263636-263734";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"261627-263550";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"PANA_0219";i:14;s:6:"Operon";i:15;s:7:"1185438";i:16;s:31:"PANA_0218(thiE);PANA_0219(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"303887-304079";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"304189-305542";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:9:"PANA_0247";i:14;s:11:"Single gene";i:15;s:7:"2806157";i:16;s:15:"PANA_0247(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"810216-810320";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"809185-810172";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:4:"TbpA";i:13;s:9:"PANA_0694";i:14;s:6:"Operon";i:15;s:7:"1185531";i:16;s:47:"PANA_0692(thiQ);PANA_0693(thiP);PANA_0694(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1385861-1385994";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1386984-1387500";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"PANA_1222";i:14;s:6:"Operon";i:15;s:7:"1185634";i:16;s:79:"PANA_1221(moaA);PANA_1222(moaB);PANA_1223(moaC);PANA_1224(moaD);PANA_1225(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1830423-1830596";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1830669-1831689";i:10;s:1:"+";i:11;s:9:"PANA_1632";i:12;s:0:"";i:13;s:9:"PANA_1632";i:14;s:11:"Single gene";i:15;s:7:"2806720";i:16;s:9:"PANA_1632";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2825920-2826016";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2824300-2825167";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:4:"ThiD";i:13;s:9:"PANA_2525";i:14;s:6:"Operon";i:15;s:7:"1185879";i:16;s:31:"PANA_2525(thiD);PANA_2526(thiM)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3025377-3025445";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3025464-3026550";i:10;s:1:"-";i:11;s:4:"aroC";i:12;s:75:"Chorismate synthase (CS) (5-enolpyruvylshikimate-3-phosphate phospholyase)";i:13;s:9:"PANA_2688";i:14;s:6:"Operon";i:15;s:7:"1185917";i:16;s:95:"PANA_2684(yfcL);PANA_2685(yfcM);PANA_2686(yfcA);PANA_2687(mepA);PANA_2688(aroC);PANA_2689(yfcB)";i:17;s:106:"aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3768672-3768820";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3767904-3768561";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"PANA_3377";i:14;s:11:"Single gene";i:15;s:7:"2807383";i:16;s:15:"PANA_3377(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4203149-4203225";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"4202677-4203112";i:10;s:1:"-";i:11;s:4:"crcB";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"PANA_3797";i:14;s:11:"Single gene";i:15;s:7:"2807540";i:16;s:15:"PANA_3797(crcB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4251600-4251783";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4249676-4251533";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:9:"PANA_3834";i:14;s:6:"Operon";i:15;s:7:"1186141";i:16;s:31:"PANA_3833(murI);PANA_3834(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4522219-4522268";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4518593-4522199";i:10;s:1:"-";i:11;s:9:"PANA_4072";i:12;s:0:"";i:13;s:9:"PANA_4072";i:14;s:11:"Single gene";i:15;s:7:"2807655";i:16;s:9:"PANA_4072";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4526415-4526513";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"4525300-4526359";i:10;s:1:"-";i:11;s:9:"PANA_4077";i:12;s:0:"";i:13;s:9:"PANA_4077";i:14;s:6:"Operon";i:15;s:7:"1186189";i:16;s:67:"PANA_4073(ycgI);PANA_4074;PANA_4075(cysA);PANA_4076(tauC);PANA_4077";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013956.2";i:2;s:27:"Pantoea ananatis LMG 20103 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4635567-4635686";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4634495-4635428";i:10;s:1:"-";i:11;s:4:"thiO";i:12;s:4:"ThiO";i:13;s:9:"PANA_4176";i:14;s:6:"Operon";i:15;s:7:"1186207";i:16;s:57:"PANA_4173(thiF);PANA_4174(thiG);PANA_4175;PANA_4176(thiO)";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}}
