About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
290072-290273
(+)
cobalamin
290312-290843 (+)
Snas_0276
Thioesterase superfamily protein
Snas_0276
Operon
DOOR ID:
676617
Snas_0276,
Snas_0277
View Structure
2
452900-453004
(+)
SAM
453057-454314 (+)
Snas_0445
Threonine synthase
Snas_0445
Single gene
DOOR ID:
2803312
Snas_0445
View Structure
3
648892-648996
(+)
ZMP-ZTP
649043-650600 (+)
Snas_0614
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Snas_0614
Operon
DOOR ID:
676678
Snas_0614,
Snas_0615
View Structure
4
966660-966770
(+)
TPP
967425-968475 (+)
Snas_0912
Glycine oxidase ThiO
Snas_0912
Operon
DOOR ID:
676746
Snas_0911,
Snas_0912
View Structure
5
1209062-1209220
(+)
ydaO-yuaA
1209298-1210201 (+)
Snas_1132
Snas_1132
Single gene
DOOR ID:
2803565
Snas_1132
View Structure
6
1511887-1512039
(-)
ydaO-yuaA
1510974-1511880 (-)
Snas_1427
NLP/P60 protein
Snas_1427
Single gene
DOOR ID:
2803634
Snas_1427
View Structure
7
2169991-2170093
(-)
TPP
2169367-2169955 (-)
Snas_2046
Membrane protein-like protein
Snas_2046
Operon
DOOR ID:
676993
Snas_2044,
Snas_2045,
Snas_2046
View Structure
8
2736585-2736713
(+)
FMN
2736810-2737392 (+)
Snas_2597
Riboflavin synthase; alpha subunit
Snas_2597
Operon
DOOR ID:
677109
Snas_2597,
Snas_2598,
Snas_2599
View Structure
9
3249393-3249469
(+)
SAH
3249581-3251036 (+)
Snas_3079
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Snas_3079
Single gene
DOOR ID:
2804209
Snas_3079
View Structure
10
3279246-3279403
(+)
cobalamin
3279523-3280732 (+)
Snas_3108
LPXTG-motif cell wall anchor domain protein
Snas_3108
Operon
DOOR ID:
677213
Snas_3108,
Snas_3109,
Snas_3110,
Snas_3111,
Snas_3112
View Structure
11
3988935-3989043
(-)
glycine
3986051-3988880 (-)
Snas_3739
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Snas_3739
Operon
DOOR ID:
677339
Snas_3738,
Snas_3739
View Structure
12
3989044-3989149
(-)
glycine
3986051-3988880 (-)
Snas_3739
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Snas_3739
Operon
DOOR ID:
677339
Snas_3738,
Snas_3739
View Structure
13
4287332-4287483
(+)
ydaO-yuaA
4287491-4288487 (+)
Snas_4018
Snas_4018
Single gene
DOOR ID:
2804538
Snas_4018
View Structure
14
5370969-5371116
(+)
cobalamin
5371253-5373503 (+)
Snas_5060
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Snas_5060
Single gene
DOOR ID:
2804900
Snas_5060
View Structure
15
6241706-6241864
(-)
ydaO-yuaA
6240745-6241693 (-)
Snas_5880
NLP/P60 protein
Snas_5880
Single gene
DOOR ID:
2805229
Snas_5880
View Structure
16
6342663-6342780
(+)
SAM-IV
6342813-6344217 (+)
Snas_5990
Cysteine desulfurase
Snas_5990
Operon
DOOR ID:
677836
Snas_5990,
Snas_5991
View Structure
17
6676657-6676795
(-)
cobalamin
6675685-6676579 (-)
Snas_6329
Periplasmic binding protein
Snas_6329
Operon
DOOR ID:
677900
Snas_6327,
Snas_6328,
Snas_6329
View Structure
Genome:
Stackebrandtia nassauensis DSM 44728
(
NC_013947.1
);
Phylum:
Actinobacteria
a:18:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"290072-290273";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"290312-290843";i:10;s:1:"+";i:11;s:9:"Snas_0276";i:12;s:32:"Thioesterase superfamily protein";i:13;s:9:"Snas_0276";i:14;s:6:"Operon";i:15;s:6:"676617";i:16;s:19:"Snas_0276;Snas_0277";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"452900-453004";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"453057-454314";i:10;s:1:"+";i:11;s:9:"Snas_0445";i:12;s:18:"Threonine synthase";i:13;s:9:"Snas_0445";i:14;s:11:"Single gene";i:15;s:7:"2803312";i:16;s:9:"Snas_0445";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"648892-648996";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"649043-650600";i:10;s:1:"+";i:11;s:9:"Snas_0614";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:9:"Snas_0614";i:14;s:6:"Operon";i:15;s:6:"676678";i:16;s:19:"Snas_0614;Snas_0615";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"966660-966770";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"967425-968475";i:10;s:1:"+";i:11;s:9:"Snas_0912";i:12;s:20:"Glycine oxidase ThiO";i:13;s:9:"Snas_0912";i:14;s:6:"Operon";i:15;s:6:"676746";i:16;s:19:"Snas_0911;Snas_0912";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1209062-1209220";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1209298-1210201";i:10;s:1:"+";i:11;s:9:"Snas_1132";i:12;s:0:"";i:13;s:9:"Snas_1132";i:14;s:11:"Single gene";i:15;s:7:"2803565";i:16;s:9:"Snas_1132";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1511887-1512039";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1510974-1511880";i:10;s:1:"-";i:11;s:9:"Snas_1427";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Snas_1427";i:14;s:11:"Single gene";i:15;s:7:"2803634";i:16;s:9:"Snas_1427";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2169991-2170093";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2169367-2169955";i:10;s:1:"-";i:11;s:9:"Snas_2046";i:12;s:29:"Membrane protein-like protein";i:13;s:9:"Snas_2046";i:14;s:6:"Operon";i:15;s:6:"676993";i:16;s:29:"Snas_2044;Snas_2045;Snas_2046";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2736585-2736713";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2736810-2737392";i:10;s:1:"+";i:11;s:9:"Snas_2597";i:12;s:35:"Riboflavin synthase; alpha subunit ";i:13;s:9:"Snas_2597";i:14;s:6:"Operon";i:15;s:6:"677109";i:16;s:29:"Snas_2597;Snas_2598;Snas_2599";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3249393-3249469";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3249581-3251036";i:10;s:1:"+";i:11;s:9:"Snas_3079";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"Snas_3079";i:14;s:11:"Single gene";i:15;s:7:"2804209";i:16;s:9:"Snas_3079";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3279246-3279403";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3279523-3280732";i:10;s:1:"+";i:11;s:9:"Snas_3108";i:12;s:43:"LPXTG-motif cell wall anchor domain protein";i:13;s:9:"Snas_3108";i:14;s:6:"Operon";i:15;s:6:"677213";i:16;s:49:"Snas_3108;Snas_3109;Snas_3110;Snas_3111;Snas_3112";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3988935-3989043";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3986051-3988880";i:10;s:1:"-";i:11;s:9:"Snas_3739";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Snas_3739";i:14;s:6:"Operon";i:15;s:6:"677339";i:16;s:19:"Snas_3738;Snas_3739";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3989044-3989149";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3986051-3988880";i:10;s:1:"-";i:11;s:9:"Snas_3739";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Snas_3739";i:14;s:6:"Operon";i:15;s:6:"677339";i:16;s:19:"Snas_3738;Snas_3739";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4287332-4287483";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"4287491-4288487";i:10;s:1:"+";i:11;s:9:"Snas_4018";i:12;s:0:"";i:13;s:9:"Snas_4018";i:14;s:11:"Single gene";i:15;s:7:"2804538";i:16;s:9:"Snas_4018";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5370969-5371116";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5371253-5373503";i:10;s:1:"+";i:11;s:9:"Snas_5060";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"Snas_5060";i:14;s:11:"Single gene";i:15;s:7:"2804900";i:16;s:9:"Snas_5060";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6241706-6241864";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"6240745-6241693";i:10;s:1:"-";i:11;s:9:"Snas_5880";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Snas_5880";i:14;s:11:"Single gene";i:15;s:7:"2805229";i:16;s:9:"Snas_5880";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6342663-6342780";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"6342813-6344217";i:10;s:1:"+";i:11;s:9:"Snas_5990";i:12;s:21:"Cysteine desulfurase ";i:13;s:9:"Snas_5990";i:14;s:6:"Operon";i:15;s:6:"677836";i:16;s:19:"Snas_5990;Snas_5991";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_013947.1";i:2;s:37:"Stackebrandtia nassauensis DSM 44728 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6676657-6676795";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"6675685-6676579";i:10;s:1:"-";i:11;s:9:"Snas_6329";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Snas_6329";i:14;s:6:"Operon";i:15;s:6:"677900";i:16;s:29:"Snas_6327;Snas_6328;Snas_6329";i:17;s:0:"";i:18;s:15:"View Structure ";}}