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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
201490-201633
(+)
cobalamin
201748-202630 (+)
Mrub_0229
Mrub_0229
Operon
DOOR ID:
675947
Mrub_0229,
Mrub_0230,
Mrub_0231,
Mrub_0232,
Mrub_0233,
Mrub_0234,
Mrub_0235,
Mrub_0236,
Mrub_0237,
Mrub_0238,
Mrub_0239,
Mrub_0240
View Structure
2
441052-441148
(+)
TPP
441172-442255 (+)
Mrub_0455
Mrub_0455
Operon
DOOR ID:
675999
Mrub_0455,
Mrub_0456
View Structure
3
468979-469127
(+)
SAM
469171-470440 (+)
Mrub_0481
Mrub_0481
Operon
DOOR ID:
676006
Mrub_0481,
Mrub_0482
View Structure
4
842265-842385
(-)
SAM
841619-842252 (-)
Mrub_0858
Mrub_0858
Operon
DOOR ID:
676081
Mrub_0857,
Mrub_0858
View Structure
5
961760-961879
(-)
cobalamin
961217-961598 (-)
Mrub_0970
Mrub_0970
Operon
DOOR ID:
676109
Mrub_0965,
Mrub_0966,
Mrub_0967,
Mrub_0968,
Mrub_0969,
Mrub_0970
View Structure
6
982740-982892
(-)
yybP-ykoY
982000-982738 (-)
Mrub_0990
Mrub_0990
Single gene
DOOR ID:
2802496
Mrub_0990
View Structure
7
1080015-1080164
(-)
FMN
1078883-1079861 (-)
Mrub_1075
Mrub_1075
Single gene
DOOR ID:
2802527
Mrub_1075
View Structure
8
1282298-1282418
(-)
FMN
1281117-1282272 (-)
Mrub_1255
Mrub_1255
Operon
DOOR ID:
676173
Mrub_1253,
Mrub_1254,
Mrub_1255
View Structure
9
1760660-1760834
(+)
SAM
1761024-1762317 (+)
Mrub_1708
Mrub_1708
Operon
DOOR ID:
676272
Mrub_1708,
Mrub_1709
View Structure
10
1766661-1766748
(-)
glycine
1763728-1766578 (-)
Mrub_1710
Mrub_1710
Single gene
DOOR ID:
2802729
Mrub_1710
View Structure
11
2078745-2078851
(+)
TPP
2078907-2079534 (+)
Mrub_2041
Mrub_2041
Operon
DOOR ID:
676342
Mrub_2041,
Mrub_2042,
Mrub_2043,
Mrub_2044,
Mrub_2045,
Mrub_2046
View Structure
12
2770688-2770773
(+)
c-di-GMP-II
2772497-2773208 (+)
Mrub_2735
Mrub_2735
Operon
DOOR ID:
676486
Mrub_2734,
Mrub_2735,
Mrub_2736,
Mrub_2737
View Structure
Genome:
Meiothermus ruber DSM 1279
(
NC_013946.1
);
Phylum:
Deinococcus-Thermus
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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013946.1";i:2;s:27:"Meiothermus ruber DSM 1279 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"441052-441148";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"441172-442255";i:10;s:1:"+";i:11;s:9:"Mrub_0455";i:12;s:0:"";i:13;s:9:"Mrub_0455";i:14;s:6:"Operon";i:15;s:6:"675999";i:16;s:19:"Mrub_0455;Mrub_0456";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013946.1";i:2;s:27:"Meiothermus ruber DSM 1279 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"468979-469127";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"469171-470440";i:10;s:1:"+";i:11;s:9:"Mrub_0481";i:12;s:0:"";i:13;s:9:"Mrub_0481";i:14;s:6:"Operon";i:15;s:6:"676006";i:16;s:19:"Mrub_0481;Mrub_0482";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013946.1";i:2;s:27:"Meiothermus ruber DSM 1279 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";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"982740-982892";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"982000-982738";i:10;s:1:"-";i:11;s:9:"Mrub_0990";i:12;s:0:"";i:13;s:9:"Mrub_0990";i:14;s:11:"Single gene";i:15;s:7:"2802496";i:16;s:9:"Mrub_0990";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013946.1";i:2;s:27:"Meiothermus ruber DSM 1279 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"1080015-1080164";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1078883-1079861";i:10;s:1:"-";i:11;s:9:"Mrub_1075";i:12;s:0:"";i:13;s:9:"Mrub_1075";i:14;s:11:"Single gene";i:15;s:7:"2802527";i:16;s:9:"Mrub_1075";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013946.1";i:2;s:27:"Meiothermus ruber DSM 1279 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"1282298-1282418";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1281117-1282272";i:10;s:1:"-";i:11;s:9:"Mrub_1255";i:12;s:0:"";i:13;s:9:"Mrub_1255";i:14;s:6:"Operon";i:15;s:6:"676173";i:16;s:29:"Mrub_1253;Mrub_1254;Mrub_1255";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013946.1";i:2;s:27:"Meiothermus ruber DSM 1279 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"1760660-1760834";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1761024-1762317";i:10;s:1:"+";i:11;s:9:"Mrub_1708";i:12;s:0:"";i:13;s:9:"Mrub_1708";i:14;s:6:"Operon";i:15;s:6:"676272";i:16;s:19:"Mrub_1708;Mrub_1709";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013946.1";i:2;s:27:"Meiothermus ruber DSM 1279 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"1766661-1766748";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1763728-1766578";i:10;s:1:"-";i:11;s:9:"Mrub_1710";i:12;s:0:"";i:13;s:9:"Mrub_1710";i:14;s:11:"Single gene";i:15;s:7:"2802729";i:16;s:9:"Mrub_1710";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013946.1";i:2;s:27:"Meiothermus ruber DSM 1279 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2078745-2078851";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2078907-2079534";i:10;s:1:"+";i:11;s:9:"Mrub_2041";i:12;s:0:"";i:13;s:9:"Mrub_2041";i:14;s:6:"Operon";i:15;s:6:"676342";i:16;s:59:"Mrub_2041;Mrub_2042;Mrub_2043;Mrub_2044;Mrub_2045;Mrub_2046";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013946.1";i:2;s:27:"Meiothermus ruber DSM 1279 ";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2770688-2770773";i:6;s:1:"+";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:15:"2772497-2773208";i:10;s:1:"+";i:11;s:9:"Mrub_2735";i:12;s:0:"";i:13;s:9:"Mrub_2735";i:14;s:6:"Operon";i:15;s:6:"676486";i:16;s:39:"Mrub_2734;Mrub_2735;Mrub_2736;Mrub_2737";i:17;s:0:"";i:18;s:15:"View Structure ";}}
