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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
164679-164880
(+)
cobalamin
164953-165913 (+)
Dacet_0164
Sirohydrochlorin cobaltochelatase
Dacet_0164
Operon
DOOR ID:
675281
Dacet_0164,
Dacet_0165,
Dacet_0166,
Dacet_0167,
Dacet_0168,
Dacet_0169,
Dacet_0170
View Structure
2
1710988-1711123
(-)
cobalamin
1708596-1710864 (-)
Dacet_1634
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Dacet_1634
Single gene
DOOR ID:
2801847
Dacet_1634
View Structure
3
2154581-2154630
(+)
mini-ykkC
2154651-2154969 (+)
Dacet_2040
Dacet_2040
Single gene
DOOR ID:
2801963
Dacet_2040
View Structure
4
2458198-2458283
(-)
ZMP-ZTP
2456898-2458137 (-)
Dacet_2325
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Dacet_2325
Single gene
DOOR ID:
2802031
Dacet_2325
View Structure
5
2663761-2663902
(+)
FMN
2663955-2664582 (+)
Dacet_2520
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Dacet_2520
Operon
DOOR ID:
675782
Dacet_2520,
Dacet_2521
View Structure
6
2913281-2913390
(-)
SAM
2911932-2913213 (-)
Dacet_2739
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Dacet_2739
Operon
DOOR ID:
675829
Dacet_2737,
Dacet_2738,
Dacet_2739
View Structure
7
3192888-3192985
(+)
TPP
3193361-3194633 (+)
Dacet_2991
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Dacet_2991
Operon
DOOR ID:
675887
Dacet_2991,
Dacet_2992,
Dacet_2993
View Structure
Genome:
Denitrovibrio acetiphilus DSM 12809
(
NC_013943.1
);
Phylum:
Deferribacteres
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