Genome: Escherichia coli O55:H7 str. CB9615 (NC_013941.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 80286-80385 (-)TPP79271-80267 (-)tbpA

Thiamine/thiamine pyrophosphate ABC transporter; periplasmic thiamine/thiamine pyrophospate-binding protein

DOOR ID: 674257
G2583_0069 (thiQ),
G2583_0070 (thiP),
G2583_0071 (tbpA)
View Structure
2 1036307-1036451 (+)MOCO1037449-1037962 (+)moaB

Molybdenum cofactor biosynthesis protein B

DOOR ID: 674433
G2583_1009 (moaA),
G2583_1010 (moaB),
G2583_1011 (moaC),
G2583_1012 (moaD),
G2583_1013 (moaE)
View Structure
3 2298243-2298344 (+)yybP-ykoY2298421-2299042 (+)yebN

Probable manganese efflux pump MntP
G2583_2270Single gene

DOOR ID: 2800483
G2583_2270 (yebN) View Structure
4 2649400-2649496 (-)TPP2648576-2649365 (-)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)

DOOR ID: 674733
G2583_2633 (yegW),
G2583_2634 (yegX),
G2583_2635 (thiD),
G2583_2636 (thiM)
View Structure
5 3820418-3820566 (-)FMN3819660-3820314 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
G2583_3768Single gene

DOOR ID: 2800951
G2583_3768 (ribB) View Structure
6 4860291-4860481 (+)cobalamin4860545-4862390 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 675140
G2583_4781 (btuB),
G2583_4782 (murI)
View Structure
7 4892645-4892745 (-)TPP4890668-4892564 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 675145
G2583_4807 (thiH),
G2583_4808 (thiG),
G2583_4809 (thiS),
G2583_4810 (thiF),
G2583_4811 (thiE),
G2583_4812 (thiC)
View Structure
8 4935462-4935658 (-)lysine4934020-4935370 (-)lysC

G2583_4849Single gene

DOOR ID: 2801318
G2583_4849 (lysC) View Structure
9 5079502-5079548 (+)mini-ykkC5079879-5080413 (-)blc


DOOR ID: 675174
G2583_4978 (blc),
G2583_4979 (ampC),
G2583_4980 (frdD),
G2583_4981 (frdC),
G2583_4982 (frdB),
G2583_4983 (frdA)
View Structure
10 5171347-5171462 (+)Mg sensor5171555-5174252 (+)mgtA

Magnesium-transporting ATPase; P-type 1
G2583_5072Single gene

DOOR ID: 2801413
G2583_5072 (mgtA) View Structure