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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
507669-507869
(+)
cobalamin
507972-509877 (+)
DEFDS_0532
TonB-dependent receptor
DEFDS_0532
Operon
DOOR ID:
673890
DEFDS_0532,
DEFDS_0533,
DEFDS_0534
(cobO)
,
DEFDS_0535,
DEFDS_0536
View Structure
2
819668-819802
(+)
MOCO
819848-820874 (+)
DEFDS_0823
Molybdopterin biosynthesis protein
DEFDS_0823
Operon
DOOR ID:
673945
DEFDS_0823,
DEFDS_0824,
DEFDS_0825,
DEFDS_0826,
DEFDS_0827,
DEFDS_0828,
DEFDS_0829
View Structure
3
1646309-1646403
(+)
TPP
1646457-1647735 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
DEFDS_1615
Operon
DOOR ID:
674090
DEFDS_1615
(thiC)
,
DEFDS_1616
(thiE)
,
DEFDS_1617
(thiL)
View Structure
4
1891369-1891478
(+)
SAM
1891552-1892686 (+)
DEFDS_1867
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
DEFDS_1867
Operon
DOOR ID:
674134
DEFDS_1867,
DEFDS_1868,
DEFDS_1869,
DEFDS_1870,
DEFDS_1871
View Structure
5
2093145-2093347
(-)
cobalamin
2091725-2093069 (-)
cbiA1
Cobyrinic acid a;c-diamide synthase
DEFDS_2061
Operon
DOOR ID:
674162
DEFDS_2040
(cbiH)
,
DEFDS_2041
(cbiG)
,
DEFDS_2042
(cbiF)
,
DEFDS_2043
(cbiE)
,
DEFDS_2044
(cbiD)
,
DEFDS_2045,
DEFDS_2046
(cbiB)
,
DEFDS_2047
(cbiP)
,
DEFDS_2048,
DEFDS_2049
(cobS)
,
DEFDS_2050
(cobT)
,
DEFDS_2051
(cobU)
,
DEFDS_2052,
DEFDS_2053
(cbiJ)
,
DEFDS_2054
(cbiC)
,
DEFDS_2055
(cobI)
,
DEFDS_2056,
DEFDS_2057,
DEFDS_2058,
DEFDS_2059,
DEFDS_2060
(cbiK)
,
DEFDS_2061
(cbiA1)
View Structure
Genome:
Deferribacter desulfuricans SSM1
(
NC_013939.1
);
Phylum:
Deferribacteres
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013939.1";i:2;s:32:"Deferribacter desulfuricans SSM1";i:3;s:15:"Deferribacteres";i:4;s:5:"68337";i:5;s:13:"507669-507869";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"507972-509877";i:10;s:1:"+";i:11;s:10:"DEFDS_0532";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"DEFDS_0532";i:14;s:6:"Operon";i:15;s:6:"673890";i:16;s:60:"DEFDS_0532;DEFDS_0533;DEFDS_0534(cobO);DEFDS_0535;DEFDS_0536";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013939.1";i:2;s:32:"Deferribacter desulfuricans SSM1";i:3;s:15:"Deferribacteres";i:4;s:5:"68337";i:5;s:13:"819668-819802";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"819848-820874";i:10;s:1:"+";i:11;s:10:"DEFDS_0823";i:12;s:34:"Molybdopterin biosynthesis protein";i:13;s:10:"DEFDS_0823";i:14;s:6:"Operon";i:15;s:6:"673945";i:16;s:76:"DEFDS_0823;DEFDS_0824;DEFDS_0825;DEFDS_0826;DEFDS_0827;DEFDS_0828;DEFDS_0829";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013939.1";i:2;s:32:"Deferribacter desulfuricans SSM1";i:3;s:15:"Deferribacteres";i:4;s:5:"68337";i:5;s:15:"1646309-1646403";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1646457-1647735";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"DEFDS_1615";i:14;s:6:"Operon";i:15;s:6:"674090";i:16;s:50:"DEFDS_1615(thiC);DEFDS_1616(thiE);DEFDS_1617(thiL)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013939.1";i:2;s:32:"Deferribacter desulfuricans SSM1";i:3;s:15:"Deferribacteres";i:4;s:5:"68337";i:5;s:15:"1891369-1891478";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1891552-1892686";i:10;s:1:"+";i:11;s:10:"DEFDS_1867";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:10:"DEFDS_1867";i:14;s:6:"Operon";i:15;s:6:"674134";i:16;s:54:"DEFDS_1867;DEFDS_1868;DEFDS_1869;DEFDS_1870;DEFDS_1871";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013939.1";i:2;s:32:"Deferribacter desulfuricans SSM1";i:3;s:15:"Deferribacteres";i:4;s:5:"68337";i:5;s:15:"2093145-2093347";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2091725-2093069";i:10;s:1:"-";i:11;s:5:"cbiA1";i:12;s:36:"Cobyrinic acid a;c-diamide synthase ";i:13;s:10:"DEFDS_2061";i:14;s:6:"Operon";i:15;s:6:"674162";i:16;s:332:"DEFDS_2040(cbiH);DEFDS_2041(cbiG);DEFDS_2042(cbiF);DEFDS_2043(cbiE);DEFDS_2044(cbiD);DEFDS_2045;DEFDS_2046(cbiB);DEFDS_2047(cbiP);DEFDS_2048;DEFDS_2049(cobS);DEFDS_2050(cobT);DEFDS_2051(cobU);DEFDS_2052;DEFDS_2053(cbiJ);DEFDS_2054(cbiC);DEFDS_2055(cobI);DEFDS_2056;DEFDS_2057;DEFDS_2058;DEFDS_2059;DEFDS_2060(cbiK);DEFDS_2061(cbiA1)";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}}