Genome: Streptomyces scabiei 87.22 (NC_013929.1); Phylum: Actinobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 1102092-1102233 (-)cobalamin1098392-1102022 (-)cobN

Probable cobalamin biosynthesis protein cobN
SCAB_9771Single gene

DOOR ID: 2795604
SCAB_9771 (cobN) View Structure
2 1110938-1111019 (-)cobalamin1109754-1110810 (-)SCAB_9851

Putative FecCD-family membrane transport protein

DOOR ID: 672314
View Structure
3 1442356-1442514 (-)ydaO-yuaA1441343-1442351 (-)SCAB_12851

Putative secreted peptidase
SCAB_12851Single gene

DOOR ID: 2795742
SCAB_12851 View Structure
4 2742060-2742229 (-)ydaO-yuaA2741257-2742046 (-)SCAB_24251

Putative secreted peptidase
SCAB_24251Single gene

DOOR ID: 2796204
SCAB_24251 View Structure
5 2960045-2960152 (-)TPP2958882-2959965 (-)SCAB_25941

Putative solute-binding transport system protein
SCAB_25941Single gene

DOOR ID: 2796294
SCAB_25941 View Structure
6 3127909-3128005 (+)glycine3128252-3129305 (+)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)
SCAB_27461Single gene

DOOR ID: 2796363
SCAB_27461 (gcvT) View Structure
7 3440476-3440565 (+)cobalamin3440708-3443117 (+)nrdL

Ribonucleoside-diphosphate reductase

DOOR ID: 672680
SCAB_30261 (nrdL),
SCAB_30271 (nrdM)
View Structure
8 4022668-4022756 (-)ZMP-ZTP4021187-4022636 (-)glyA1

Serine hydroxymethyltransferase (SHMT) (Serine methylase)
SCAB_35641Single gene

DOOR ID: 2796743
SCAB_35641 (glyA1) View Structure
9 4058243-4058416 (+)ydaO-yuaA4058424-4059681 (+)SCAB_35931

Putative secreted protein
SCAB_35931Single gene

DOOR ID: 2796758
SCAB_35931 View Structure
10 4256404-4256609 (+)ydaO-yuaA4256613-4257366 (+)SCAB_37841

Putative peptidoglycan binding protein
SCAB_37841Single gene

DOOR ID: 2796834
SCAB_37841 View Structure
11 5191843-5191999 (+)TPP5193931-5195377 (+)SCAB_46351

Putative stress response protein
SCAB_46351Single gene

DOOR ID: 2797253
SCAB_46351 View Structure
12 5467025-5467186 (+)ydaO-yuaA5467196-5468258 (+)SCAB_49021

Putative peptidase
SCAB_49021Single gene

DOOR ID: 2797342
SCAB_49021 View Structure
13 5615959-5616105 (+)SAM5617534-5617810 (+)SCAB_50411

Putative sulfur metabolism protein
SCAB_50411Single gene

DOOR ID: 2797430
SCAB_50411 View Structure
14 6048653-6048852 (+)ydaO-yuaA6048856-6049558 (+)SCAB_54431

Putative cell wall catabolism protein
SCAB_54431Single gene

DOOR ID: 2797654
SCAB_54431 View Structure
15 6326255-6326322 (+)ykkC-III6326354-6326675 (+)SCAB_56791

SCAB_56791single gene

DOOR ID: 2797771
SCAB_56791 View Structure
16 7459665-7459780 (+)SAM-IV7459899-7461270 (+)SCAB_67391

Putative pyridoxalphosphate-dependent enzyme
SCAB_67391Single gene

DOOR ID: 2798209
SCAB_67391 View Structure
17 7498364-7498475 (-)TPP7496975-7497170 (-)thiS

Putative thiamin biosynthesis protein

DOOR ID: 673332
SCAB_67721 (thiG),
SCAB_67731 (thiS),
View Structure
18 7850986-7851069 (-)cobalamin7849896-7850856 (-)cobD

Cobalamin biosynthesis protein CobD

DOOR ID: 673394
SCAB_70871 (cobQ),
SCAB_70881 (cobD)
View Structure
19 8357708-8357838 (+)FMN8357993-8358614 (+)SCAB_75601

Putative riboflavin synthase alpha subunit

DOOR ID: 673475
SCAB_75621 (ribAB),
SCAB_75631 (ribH),
SCAB_75641 (hisE),
SCAB_75651 (hisG),
View Structure
20 8442522-8442618 (+)glycine8442790-8445676 (+)SCAB_76331

Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
SCAB_76331Single gene

DOOR ID: 2798614
SCAB_76331 View Structure
21 8652217-8652428 (-)ydaO-yuaA8651739-8652183 (-)SCAB_78291

Putative NLP/P60 family protein (Putative secreted protein)
SCAB_78291Single gene

DOOR ID: 2798732
SCAB_78291 View Structure
22 9425449-9425654 (-)cobalamin9424705-9425419 (-)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)

DOOR ID: 673625
SCAB_84371 (cbiO),
SCAB_84381 (cbiQ),
SCAB_84391 (cbiN),
SCAB_84401 (cbiM)
View Structure