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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
318263-318430
(+)
lysine
318508-319384 (+)
HMPREF0868_1419
ABC transporter; substrate-binding protein; family 3
HMPREF0868_1419
Single gene
DOOR ID:
2791184
HMPREF0868_1419
View Structure
2
522386-522484
(+)
TPP
522544-523300 (+)
HMPREF0868_1228
Oxidoreductase; short chain dehydrogenase/reductase family protein
HMPREF0868_1228
Single gene
DOOR ID:
2790751
HMPREF0868_1228
View Structure
3
646115-646216
(+)
TPP
646337-647171 (+)
thiD_1
Phosphomethylpyrimidine kinase
HMPREF0868_1105
Operon
DOOR ID:
670012
HMPREF0868_1105
(thiD_1)
,
HMPREF0868_1104
View Structure
4
671363-671458
(-)
purine
669842-671270 (-)
pbuX
Xanthine permease
HMPREF0868_1084
Operon
DOOR ID:
670017
HMPREF0868_1085
(xpt)
,
HMPREF0868_1084
(pbuX)
View Structure
5
690883-690954
(+)
fluoride
692297-693875 (+)
guaA
GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
HMPREF0868_1066
Single gene
DOOR ID:
2791176
HMPREF0868_1066
(guaA)
View Structure
6
840313-840426
(-)
FMN
839721-840270 (-)
HMPREF0868_0928
Riboflavin transporter
HMPREF0868_0928
Single gene
DOOR ID:
2791127
HMPREF0868_0928
View Structure
7
1055183-1055285
(-)
SAM
1053923-1055129 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
HMPREF0868_0740
Single gene
DOOR ID:
2791122
HMPREF0868_0740
(metK)
View Structure
8
1789279-1789379
(-)
purine
1787790-1789221 (-)
HMPREF0868_0112
Putative permease
HMPREF0868_0112
Single gene
DOOR ID:
2790837
HMPREF0868_0112
View Structure
Genome:
Clostridiales genomosp. BVAB3 str. UPII9-5
(
NC_013895.2
);
Phylum:
Firmicutes
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