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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
234492-234591
(-)
TPP
233352-234420 (-)
SLGD_00221
SLGD_00221
Operon
DOOR ID:
669085
SLGD_00219,
SLGD_00220,
SLGD_00221
View Structure
2
234689-234787
(+)
TPP
234923-235496 (+)
SLGD_00222
SLGD_00222
Single gene
DOOR ID:
2789679
SLGD_00222
View Structure
3
259580-259680
(-)
TPP
258565-259480 (-)
SLGD_00240
SLGD_00240
Single gene
DOOR ID:
2789685
SLGD_00240
View Structure
4
366219-366321
(-)
TPP
365345-366095 (-)
SLGD_00349
SLGD_00349
Operon
DOOR ID:
669113
SLGD_00348,
SLGD_00349
View Structure
5
430400-430506
(+)
SAM
430609-431425 (+)
SLGD_00391
SLGD_00391
Single gene
DOOR ID:
2789740
SLGD_00391
View Structure
6
552156-552267
(-)
TPP
551502-552093 (-)
SLGD_00498
SLGD_00498
Operon
DOOR ID:
669140
SLGD_00494,
SLGD_00495,
SLGD_00496,
SLGD_00497,
SLGD_00498
View Structure
7
697920-698021
(+)
TPP
698332-700069 (+)
SLGD_00637
SLGD_00637
Single gene
DOOR ID:
2789866
SLGD_00637
View Structure
8
925418-925633
(+)
glmS
925830-927636 (+)
SLGD_00865
SLGD_00865
Single gene
DOOR ID:
2789956
SLGD_00865
View Structure
9
986737-986840
(+)
TPP
986926-987604 (+)
SLGD_00928
SLGD_00928
Operon
DOOR ID:
669212
SLGD_00928,
SLGD_00929,
SLGD_00930,
SLGD_00931
View Structure
10
1177668-1177776
(+)
SAM
1177878-1179075 (+)
SLGD_01149
SLGD_01149
Single gene
DOOR ID:
2790049
SLGD_01149
View Structure
11
1188237-1188366
(+)
FMN
1188441-1189548 (+)
SLGD_01162
SLGD_01162
Operon
DOOR ID:
669253
SLGD_01162,
SLGD_01163,
SLGD_01164,
SLGD_01165
View Structure
12
1289462-1289637
(+)
lysine
1289875-1291369 (+)
SLGD_01248
SLGD_01248
Single gene
DOOR ID:
2790094
SLGD_01248
View Structure
13
1413859-1413958
(+)
glycine
1414031-1415123 (+)
SLGD_01378
SLGD_01378
Operon
DOOR ID:
669302
SLGD_01378,
SLGD_01379,
SLGD_01380
View Structure
14
1458564-1458694
(+)
FMN
1458759-1459302 (+)
SLGD_01422
SLGD_01422
Single gene
DOOR ID:
2790130
SLGD_01422
View Structure
15
1527540-1527715
(+)
lysine
1527800-1529003 (+)
SLGD_01486
SLGD_01486
Single gene
DOOR ID:
2790149
SLGD_01486
View Structure
16
1866743-1866842
(+)
TPP
1866922-1867498 (+)
SLGD_01797
SLGD_01797
Operon
DOOR ID:
669398
SLGD_01797,
SLGD_01798,
SLGD_01799
View Structure
17
1920302-1920493
(-)
yybP-ykoY
1919496-1920294 (-)
SLGD_01847
SLGD_01847
Single gene
DOOR ID:
2790273
SLGD_01847
View Structure
18
2089566-2089674
(-)
SAM
2088454-2089480 (-)
SLGD_02013
SLGD_02013
Operon
DOOR ID:
669440
SLGD_02011,
SLGD_02012,
SLGD_02013
View Structure
19
2202701-2202747
(+)
PreQ1
2202890-2203562 (+)
SLGD_02122
SLGD_02122
Operon
DOOR ID:
669462
SLGD_02122,
SLGD_02123,
SLGD_02124
View Structure
20
2554573-2554675
(-)
purine
2553776-2554358 (-)
SLGD_02474
SLGD_02474
Operon
DOOR ID:
669531
SLGD_02471,
SLGD_02472,
SLGD_02473,
SLGD_02474
View Structure
21
2638766-2638864
(+)
SAM
2638930-2639899 (+)
SLGD_02557
SLGD_02557
Single gene
DOOR ID:
2790534
SLGD_02557
View Structure
Genome:
Staphylococcus lugdunensis HKU09-01
(
NC_013893.1
);
Phylum:
Firmicutes
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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"925418-925633";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"925830-927636";i:10;s:1:"+";i:11;s:10:"SLGD_00865";i:12;s:0:"";i:13;s:10:"SLGD_00865";i:14;s:11:"Single gene";i:15;s:7:"2789956";i:16;s:10:"SLGD_00865";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"986737-986840";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"986926-987604";i:10;s:1:"+";i:11;s:10:"SLGD_00928";i:12;s:0:"";i:13;s:10:"SLGD_00928";i:14;s:6:"Operon";i:15;s:6:"669212";i:16;s:43:"SLGD_00928;SLGD_00929;SLGD_00930;SLGD_00931";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1177668-1177776";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1177878-1179075";i:10;s:1:"+";i:11;s:10:"SLGD_01149";i:12;s:0:"";i:13;s:10:"SLGD_01149";i:14;s:11:"Single gene";i:15;s:7:"2790049";i:16;s:10:"SLGD_01149";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1188237-1188366";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1188441-1189548";i:10;s:1:"+";i:11;s:10:"SLGD_01162";i:12;s:0:"";i:13;s:10:"SLGD_01162";i:14;s:6:"Operon";i:15;s:6:"669253";i:16;s:43:"SLGD_01162;SLGD_01163;SLGD_01164;SLGD_01165";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1289462-1289637";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1289875-1291369";i:10;s:1:"+";i:11;s:10:"SLGD_01248";i:12;s:0:"";i:13;s:10:"SLGD_01248";i:14;s:11:"Single gene";i:15;s:7:"2790094";i:16;s:10:"SLGD_01248";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1413859-1413958";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1414031-1415123";i:10;s:1:"+";i:11;s:10:"SLGD_01378";i:12;s:0:"";i:13;s:10:"SLGD_01378";i:14;s:6:"Operon";i:15;s:6:"669302";i:16;s:32:"SLGD_01378;SLGD_01379;SLGD_01380";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1458564-1458694";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1458759-1459302";i:10;s:1:"+";i:11;s:10:"SLGD_01422";i:12;s:0:"";i:13;s:10:"SLGD_01422";i:14;s:11:"Single gene";i:15;s:7:"2790130";i:16;s:10:"SLGD_01422";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1527540-1527715";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1527800-1529003";i:10;s:1:"+";i:11;s:10:"SLGD_01486";i:12;s:0:"";i:13;s:10:"SLGD_01486";i:14;s:11:"Single gene";i:15;s:7:"2790149";i:16;s:10:"SLGD_01486";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1866743-1866842";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1866922-1867498";i:10;s:1:"+";i:11;s:10:"SLGD_01797";i:12;s:0:"";i:13;s:10:"SLGD_01797";i:14;s:6:"Operon";i:15;s:6:"669398";i:16;s:32:"SLGD_01797;SLGD_01798;SLGD_01799";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1920302-1920493";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1919496-1920294";i:10;s:1:"-";i:11;s:10:"SLGD_01847";i:12;s:0:"";i:13;s:10:"SLGD_01847";i:14;s:11:"Single gene";i:15;s:7:"2790273";i:16;s:10:"SLGD_01847";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2089566-2089674";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2088454-2089480";i:10;s:1:"-";i:11;s:10:"SLGD_02013";i:12;s:0:"";i:13;s:10:"SLGD_02013";i:14;s:6:"Operon";i:15;s:6:"669440";i:16;s:32:"SLGD_02011;SLGD_02012;SLGD_02013";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2202701-2202747";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"2202890-2203562";i:10;s:1:"+";i:11;s:10:"SLGD_02122";i:12;s:0:"";i:13;s:10:"SLGD_02122";i:14;s:6:"Operon";i:15;s:6:"669462";i:16;s:32:"SLGD_02122;SLGD_02123;SLGD_02124";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2554573-2554675";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2553776-2554358";i:10;s:1:"-";i:11;s:10:"SLGD_02474";i:12;s:0:"";i:13;s:10:"SLGD_02474";i:14;s:6:"Operon";i:15;s:6:"669531";i:16;s:43:"SLGD_02471;SLGD_02472;SLGD_02473;SLGD_02474";i:17;s:0:"";i:18;s:15:"View Structure ";}i:21;a:19:{i:0;i:21;i:1;s:11:"NC_013893.1";i:2;s:36:"Staphylococcus lugdunensis HKU09-01 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2638766-2638864";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2638930-2639899";i:10;s:1:"+";i:11;s:10:"SLGD_02557";i:12;s:0:"";i:13;s:10:"SLGD_02557";i:14;s:11:"Single gene";i:15;s:7:"2790534";i:16;s:10:"SLGD_02557";i:17;s:0:"";i:18;s:15:"View Structure ";}}