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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
510581-510680
(+)
TPP
511858-512068 (+)
AZL_004530
Thiamine biosynthesis
AZL_004530
Operon
DOOR ID:
664511
AZL_004520
(thiO)
,
AZL_004530
View Structure
2
554415-554636
(-)
cobalamin
553464-554292 (-)
AZL_004840
Iron complex transport system ATP-binding protein
AZL_004840
Operon
DOOR ID:
664521
AZL_004810,
AZL_004820,
AZL_004830,
AZL_004840
View Structure
3
603160-603293
(+)
TPP
603426-605154 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
AZL_005290
Single gene
DOOR ID:
2781527
AZL_005290
(thiC)
View Structure
4
882265-882494
(+)
cobalamin
882608-884678 (+)
AZL_007800
Iron complex outermembrane recepter protein
AZL_007800
Operon
DOOR ID:
664578
AZL_007800,
AZL_007810,
AZL_007820,
AZL_007830,
AZL_007840
(hmuV)
,
AZL_007850
View Structure
5
908895-909144
(-)
cobalamin
908040-908721 (-)
AZL_008050
AZL_008050
Operon
DOOR ID:
664584
AZL_008040,
AZL_008050
View Structure
6
1399077-1399129
(+)
mini-ykkC
1399153-1399471 (+)
AZL_012220
AZL_012220
Single gene
DOOR ID:
2781810
AZL_012220
View Structure
7
1449979-1450058
(-)
sam-alpha
1448690-1449899 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
AZL_012640
Single gene
DOOR ID:
2781830
AZL_012640
(metZ)
View Structure
8
1681994-1682067
(-)
SAH
1680190-1680784 (-)
sod2
Superoxide dismutase
AZL_014560
Operon
DOOR ID:
664713
AZL_014560
(sod2)
,
AZL_014570,
AZL_014580
(crtB)
,
AZL_014590
View Structure
9
1727042-1727148
(+)
TPP
1727189-1727942 (+)
tauB
Sulfonate/nitrate/taurine transport system ATP-binding protein
AZL_014930
Operon
DOOR ID:
664719
AZL_014930
(tauB)
,
AZL_014940
(tauC)
,
AZL_014950
(tauA)
View Structure
10
1822113-1822228
(-)
glycine
1820831-1821944 (-)
gcvT
Aminomethyltransferase (0)
AZL_015880
Operon
DOOR ID:
664740
AZL_015850
(gcvPB)
,
AZL_015860
(gcvPA)
,
AZL_015870
(gcvH)
,
AZL_015880
(gcvT)
View Structure
Genome:
Azospirillum sp. B510
(
NC_013854.1
);
Phylum:
Alphaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013854.1";i:2;s:22:"Azospirillum sp. B510 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"510581-510680";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"511858-512068";i:10;s:1:"+";i:11;s:10:"AZL_004530";i:12;s:21:"Thiamine biosynthesis";i:13;s:10:"AZL_004530";i:14;s:6:"Operon";i:15;s:6:"664511";i:16;s:27:"AZL_004520(thiO);AZL_004530";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013854.1";i:2;s:22:"Azospirillum sp. B510 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"554415-554636";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"553464-554292";i:10;s:1:"-";i:11;s:10:"AZL_004840";i:12;s:49:"Iron complex transport system ATP-binding protein";i:13;s:10:"AZL_004840";i:14;s:6:"Operon";i:15;s:6:"664521";i:16;s:43:"AZL_004810;AZL_004820;AZL_004830;AZL_004840";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013854.1";i:2;s:22:"Azospirillum sp. B510 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"603160-603293";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"603426-605154";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"AZL_005290";i:14;s:11:"Single gene";i:15;s:7:"2781527";i:16;s:16:"AZL_005290(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013854.1";i:2;s:22:"Azospirillum sp. B510 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"882265-882494";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"882608-884678";i:10;s:1:"+";i:11;s:10:"AZL_007800";i:12;s:43:"Iron complex outermembrane recepter protein";i:13;s:10:"AZL_007800";i:14;s:6:"Operon";i:15;s:6:"664578";i:16;s:71:"AZL_007800;AZL_007810;AZL_007820;AZL_007830;AZL_007840(hmuV);AZL_007850";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013854.1";i:2;s:22:"Azospirillum sp. B510 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"908895-909144";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"908040-908721";i:10;s:1:"-";i:11;s:10:"AZL_008050";i:12;s:0:"";i:13;s:10:"AZL_008050";i:14;s:6:"Operon";i:15;s:6:"664584";i:16;s:21:"AZL_008040;AZL_008050";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013854.1";i:2;s:22:"Azospirillum sp. B510 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1399077-1399129";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1399153-1399471";i:10;s:1:"+";i:11;s:10:"AZL_012220";i:12;s:0:"";i:13;s:10:"AZL_012220";i:14;s:11:"Single gene";i:15;s:7:"2781810";i:16;s:10:"AZL_012220";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013854.1";i:2;s:22:"Azospirillum sp. B510 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1449979-1450058";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"1448690-1449899";i:10;s:1:"-";i:11;s:4:"metZ";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:10:"AZL_012640";i:14;s:11:"Single gene";i:15;s:7:"2781830";i:16;s:16:"AZL_012640(metZ)";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013854.1";i:2;s:22:"Azospirillum sp. B510 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1681994-1682067";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1680190-1680784";i:10;s:1:"-";i:11;s:4:"sod2";i:12;s:21:"Superoxide dismutase ";i:13;s:10:"AZL_014560";i:14;s:6:"Operon";i:15;s:6:"664713";i:16;s:55:"AZL_014560(sod2);AZL_014570;AZL_014580(crtB);AZL_014590";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013854.1";i:2;s:22:"Azospirillum sp. B510 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1727042-1727148";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1727189-1727942";i:10;s:1:"+";i:11;s:4:"tauB";i:12;s:62:"Sulfonate/nitrate/taurine transport system ATP-binding protein";i:13;s:10:"AZL_014930";i:14;s:6:"Operon";i:15;s:6:"664719";i:16;s:50:"AZL_014930(tauB);AZL_014940(tauC);AZL_014950(tauA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013854.1";i:2;s:22:"Azospirillum sp. B510 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1822113-1822228";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1820831-1821944";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:26:"Aminomethyltransferase (0)";i:13;s:10:"AZL_015880";i:14;s:6:"Operon";i:15;s:6:"664740";i:16;s:69:"AZL_015850(gcvPB);AZL_015860(gcvPA);AZL_015870(gcvH);AZL_015880(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}}
