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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
65792-65899
(-)
TPP
63722-65615 (-)
Alvin_0058
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Alvin_0058
Operon
DOOR ID:
663255
Alvin_0056,
Alvin_0057,
Alvin_0058
View Structure
2
384845-384937
(+)
SAH
384958-386365 (+)
Alvin_0320
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Alvin_0320
Operon
DOOR ID:
663316
Alvin_0320,
Alvin_0321
View Structure
3
995402-995636
(-)
cobalamin
993360-995232 (-)
Alvin_0852
TonB-dependent vitamin B12 receptor
Alvin_0852
Operon
DOOR ID:
663435
Alvin_0849,
Alvin_0850,
Alvin_0851,
Alvin_0852
View Structure
4
1056403-1056493
(-)
glycine
1055115-1056210 (-)
Alvin_0915
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Alvin_0915
Operon
DOOR ID:
663450
Alvin_0910,
Alvin_0911,
Alvin_0912,
Alvin_0913,
Alvin_0914,
Alvin_0915
View Structure
5
1763159-1763303
(-)
yybP-ykoY
1762419-1763016 (-)
Alvin_1520
Alvin_1520
Single gene
DOOR ID:
2780240
Alvin_1520
View Structure
Genome:
Allochromatium vinosum DSM 180
(
NC_013851.1
);
Phylum:
Gammaproteobacteria
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