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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
225351-225511
(-)
ydaO-yuaA
223998-225342 (-)
Cwoe_0221
Peptidoglycan-binding domain 1 protein
Cwoe_0221
Single gene
DOOR ID:
2761968
Cwoe_0221
View Structure
2
281916-282040
(+)
SAM-IV
282075-283395 (+)
Cwoe_0273
Aminotransferase class V
Cwoe_0273
Single gene
DOOR ID:
2761980
Cwoe_0273
View Structure
3
334219-334304
(-)
ZMP-ZTP
333068-334187 (-)
Cwoe_0325
Phosphoserine aminotransferase
Cwoe_0325
Single gene
DOOR ID:
2762003
Cwoe_0325
View Structure
4
812910-813022
(+)
TPP
814188-814395 (+)
Cwoe_0774
Thiamine biosynthesis protein ThiS
Cwoe_0774
Operon
DOOR ID:
653889
Cwoe_0773,
Cwoe_0774,
Cwoe_0775,
Cwoe_0776
View Structure
5
1288663-1288729
(-)
ykkC-III
1288304-1288625 (-)
Cwoe_1231
Cwoe_1231
operon
DOOR ID:
653985
Cwoe_1230,
Cwoe_1231
View Structure
6
1733173-1733293
(-)
TPP
1731636-1732416 (-)
Cwoe_1643
Binding-protein-dependent transport systems inner membrane component
Cwoe_1643
Operon
DOOR ID:
654076
Cwoe_1642,
Cwoe_1643,
Cwoe_1644
View Structure
7
1812687-1812824
(-)
cobalamin
1810703-1812638 (-)
Cwoe_1719
Cwoe_1719
Operon
DOOR ID:
654097
Cwoe_1717,
Cwoe_1718,
Cwoe_1719
View Structure
8
1812923-1813044
(+)
cobalamin
1813133-1814810 (+)
Cwoe_1720
Collagen triple helix repeat protein
Cwoe_1720
Single gene
DOOR ID:
2762361
Cwoe_1720
View Structure
9
1814847-1815031
(+)
cobalamin
1815099-1817412 (+)
Cwoe_1721
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Cwoe_1721
Operon
DOOR ID:
654098
Cwoe_1721,
Cwoe_1722
View Structure
10
1825331-1825524
(-)
cobalamin
1823721-1825299 (-)
Cwoe_1727
Cwoe_1727
Operon
DOOR ID:
654099
Cwoe_1724,
Cwoe_1725,
Cwoe_1726,
Cwoe_1727
View Structure
11
1825627-1825749
(+)
cobalamin
1825858-1827958 (+)
Cwoe_1728
Cwoe_1728
Operon
DOOR ID:
654100
Cwoe_1728,
Cwoe_1729,
Cwoe_1730,
Cwoe_1731
View Structure
12
1875787-1875933
(+)
ydaO-yuaA
1875968-1876610 (+)
Cwoe_1781
Cwoe_1781
Single gene
DOOR ID:
2762371
Cwoe_1781
View Structure
13
1880276-1880419
(+)
ydaO-yuaA
1880542-1881751 (+)
Cwoe_1788
Peptidase M23
Cwoe_1788
Operon
DOOR ID:
654109
Cwoe_1788,
Cwoe_1789,
Cwoe_1790,
Cwoe_1791,
Cwoe_1792,
Cwoe_1793,
Cwoe_1794
View Structure
14
1979810-1979969
(-)
ydaO-yuaA
1978473-1979799 (-)
Cwoe_1880
Peptidase M23
Cwoe_1880
Operon
DOOR ID:
654132
Cwoe_1879,
Cwoe_1880
View Structure
15
2904402-2904587
(-)
cobalamin
2902340-2904338 (-)
Cwoe_2720
Cwoe_2720
Single gene
DOOR ID:
2762574
Cwoe_2720
View Structure
16
2904624-2904762
(+)
cobalamin
2904813-2906622 (+)
Cwoe_2721
Cwoe_2721
Operon
DOOR ID:
654309
Cwoe_2721,
Cwoe_2722,
Cwoe_2723
View Structure
17
3400588-3400696
(+)
SAM
3400745-3401981 (+)
Cwoe_3191
Threonine synthase
Cwoe_3191
Operon
DOOR ID:
654397
Cwoe_3191,
Cwoe_3192
View Structure
18
3702288-3702504
(-)
ydaO-yuaA
3701284-3702271 (-)
Cwoe_3477
Rare lipoprotein A
Cwoe_3477
Operon
DOOR ID:
654461
Cwoe_3476,
Cwoe_3477
View Structure
19
3903611-3903695
(+)
SAH
3903924-3904824 (+)
Cwoe_3668
Alpha/beta hydrolase fold protein
Cwoe_3668
Single gene
DOOR ID:
2762803
Cwoe_3668
View Structure
20
4042551-4042686
(-)
cobalamin
4041444-4042500 (-)
Cwoe_3803
Cwoe_3803
Operon
DOOR ID:
654523
Cwoe_3798,
Cwoe_3799,
Cwoe_3800,
Cwoe_3801,
Cwoe_3802,
Cwoe_3803
View Structure
21
4509265-4509405
(-)
ydaO-yuaA
4508994-4509258 (-)
Cwoe_4245
Cwoe_4245
Single gene
DOOR ID:
2762940
Cwoe_4245
View Structure
22
4866085-4866271
(-)
ydaO-yuaA
4865398-4866073 (-)
Cwoe_4565
Transglycosylase domain protein
Cwoe_4565
Single gene
DOOR ID:
2763007
Cwoe_4565
View Structure
23
4991560-4991694
(+)
ydaO-yuaA
4991709-4992510 (+)
Cwoe_4684
Rare lipoprotein A
Cwoe_4684
Single gene
DOOR ID:
2763040
Cwoe_4684
View Structure
24
5012056-5012215
(-)
ydaO-yuaA
5010994-5011984 (-)
Cwoe_4701
Peptidoglycan-binding domain 1 protein
Cwoe_4701
Single gene
DOOR ID:
2763048
Cwoe_4701
View Structure
Genome:
Conexibacter woesei DSM 14684
(
NC_013739.1
);
Phylum:
Actinobacteria
a:25:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"225351-225511";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"223998-225342";i:10;s:1:"-";i:11;s:9:"Cwoe_0221";i:12;s:38:"Peptidoglycan-binding domain 1 protein";i:13;s:9:"Cwoe_0221";i:14;s:11:"Single gene";i:15;s:7:"2761968";i:16;s:9:"Cwoe_0221";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"281916-282040";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"282075-283395";i:10;s:1:"+";i:11;s:9:"Cwoe_0273";i:12;s:24:"Aminotransferase class V";i:13;s:9:"Cwoe_0273";i:14;s:11:"Single gene";i:15;s:7:"2761980";i:16;s:9:"Cwoe_0273";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"334219-334304";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"333068-334187";i:10;s:1:"-";i:11;s:9:"Cwoe_0325";i:12;s:30:"Phosphoserine aminotransferase";i:13;s:9:"Cwoe_0325";i:14;s:11:"Single gene";i:15;s:7:"2762003";i:16;s:9:"Cwoe_0325";i:17;s:42:"L-serine biosynthetic process [GO:0006564]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"812910-813022";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"814188-814395";i:10;s:1:"+";i:11;s:9:"Cwoe_0774";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"Cwoe_0774";i:14;s:6:"Operon";i:15;s:6:"653889";i:16;s:39:"Cwoe_0773;Cwoe_0774;Cwoe_0775;Cwoe_0776";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1288663-1288729";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"1288304-1288625";i:10;s:1:"-";i:11;s:9:"Cwoe_1231";i:12;s:0:"";i:13;s:9:"Cwoe_1231";i:14;s:6:"operon";i:15;s:6:"653985";i:16;s:19:"Cwoe_1230;Cwoe_1231";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1733173-1733293";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1731636-1732416";i:10;s:1:"-";i:11;s:9:"Cwoe_1643";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:9:"Cwoe_1643";i:14;s:6:"Operon";i:15;s:6:"654076";i:16;s:29:"Cwoe_1642;Cwoe_1643;Cwoe_1644";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1812687-1812824";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1810703-1812638";i:10;s:1:"-";i:11;s:9:"Cwoe_1719";i:12;s:0:"";i:13;s:9:"Cwoe_1719";i:14;s:6:"Operon";i:15;s:6:"654097";i:16;s:29:"Cwoe_1717;Cwoe_1718;Cwoe_1719";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1812923-1813044";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1813133-1814810";i:10;s:1:"+";i:11;s:9:"Cwoe_1720";i:12;s:36:"Collagen triple helix repeat protein";i:13;s:9:"Cwoe_1720";i:14;s:11:"Single gene";i:15;s:7:"2762361";i:16;s:9:"Cwoe_1720";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1814847-1815031";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1815099-1817412";i:10;s:1:"+";i:11;s:9:"Cwoe_1721";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"Cwoe_1721";i:14;s:6:"Operon";i:15;s:6:"654098";i:16;s:19:"Cwoe_1721;Cwoe_1722";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1825331-1825524";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1823721-1825299";i:10;s:1:"-";i:11;s:9:"Cwoe_1727";i:12;s:0:"";i:13;s:9:"Cwoe_1727";i:14;s:6:"Operon";i:15;s:6:"654099";i:16;s:39:"Cwoe_1724;Cwoe_1725;Cwoe_1726;Cwoe_1727";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1825627-1825749";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1825858-1827958";i:10;s:1:"+";i:11;s:9:"Cwoe_1728";i:12;s:0:"";i:13;s:9:"Cwoe_1728";i:14;s:6:"Operon";i:15;s:6:"654100";i:16;s:39:"Cwoe_1728;Cwoe_1729;Cwoe_1730;Cwoe_1731";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1875787-1875933";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1875968-1876610";i:10;s:1:"+";i:11;s:9:"Cwoe_1781";i:12;s:0:"";i:13;s:9:"Cwoe_1781";i:14;s:11:"Single gene";i:15;s:7:"2762371";i:16;s:9:"Cwoe_1781";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1880276-1880419";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1880542-1881751";i:10;s:1:"+";i:11;s:9:"Cwoe_1788";i:12;s:13:"Peptidase M23";i:13;s:9:"Cwoe_1788";i:14;s:6:"Operon";i:15;s:6:"654109";i:16;s:69:"Cwoe_1788;Cwoe_1789;Cwoe_1790;Cwoe_1791;Cwoe_1792;Cwoe_1793;Cwoe_1794";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1979810-1979969";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1978473-1979799";i:10;s:1:"-";i:11;s:9:"Cwoe_1880";i:12;s:13:"Peptidase M23";i:13;s:9:"Cwoe_1880";i:14;s:6:"Operon";i:15;s:6:"654132";i:16;s:19:"Cwoe_1879;Cwoe_1880";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2904402-2904587";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2902340-2904338";i:10;s:1:"-";i:11;s:9:"Cwoe_2720";i:12;s:0:"";i:13;s:9:"Cwoe_2720";i:14;s:11:"Single gene";i:15;s:7:"2762574";i:16;s:9:"Cwoe_2720";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_013739.1";i:2;s:30:"Conexibacter woesei DSM 14684 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