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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
289184-289287
(+)
SAM
289521-290835 (+)
Slin_0217
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Slin_0217
Operon
DOOR ID:
652411
Slin_0217,
Slin_0218,
Slin_0219
View Structure
2
610317-610443
(-)
glutamine
609424-609529 (-)
Slin_0494
Slin_0494
Operon
DOOR ID:
652464
Slin_0494,
Slin_0495
View Structure
3
4227507-4227608
(+)
TPP
4227654-4228461 (+)
Slin_3494
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Slin_3494
Operon
DOOR ID:
653038
Slin_3494,
Slin_3495,
Slin_3496,
Slin_3497
View Structure
4
5132446-5132553
(-)
SAM
5128554-5132340 (-)
Slin_4250
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Slin_4250
Single gene
DOOR ID:
2760660
Slin_4250
View Structure
5
5481795-5482024
(+)
cobalamin
5482180-5484508 (+)
Slin_4522
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Slin_4522
Operon
DOOR ID:
653245
Slin_4522,
Slin_4523
View Structure
6
6864298-6864392
(+)
TPP
6864469-6866851 (+)
Slin_5636
TonB-dependent receptor
Slin_5636
Single gene
DOOR ID:
2761340
Slin_5636
View Structure
7
7030424-7030634
(+)
cobalamin
7030775-7032656 (+)
Slin_5793
TonB-dependent receptor plug
Slin_5793
Operon
DOOR ID:
653464
Slin_5793,
Slin_5794,
Slin_5795
View Structure
8
7981499-7981591
(+)
TPP
7981709-7981919 (+)
Slin_6572
Thiamine biosynthesis protein ThiS
Slin_6572
Operon
DOOR ID:
653623
Slin_6572,
Slin_6573,
Slin_6574,
Slin_6575,
Slin_6576
View Structure
Genome:
Spirosoma linguale DSM 74
(
NC_013730.1
);
Phylum:
Bacteroidetes/Chlorobi group
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