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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
189067-189194
(+)
TPP
190609-191290 (+)
Kfla_0180
Methyltransferase type 11
Kfla_0180
Single gene
DOOR ID:
2756167
Kfla_0180
View Structure
2
627138-627330
(+)
cobalamin
627359-628385 (+)
Kfla_0598
Periplasmic binding protein
Kfla_0598
Operon
DOOR ID:
651002
Kfla_0598,
Kfla_0599,
Kfla_0600,
Kfla_0601
View Structure
3
663493-663684
(-)
ydaO-yuaA
662647-663493 (-)
Kfla_0631
NLP/P60 protein
Kfla_0631
Single gene
DOOR ID:
2756312
Kfla_0631
View Structure
4
1016372-1016535
(+)
TPP
1018211-1019192 (+)
Kfla_0954
Kfla_0954
Operon
DOOR ID:
651086
Kfla_0953,
Kfla_0954
View Structure
5
1289540-1289681
(+)
SAM
1289691-1290960 (+)
Kfla_1225
Threonine synthase
Kfla_1225
Operon
DOOR ID:
651150
Kfla_1225,
Kfla_1226
View Structure
6
2130317-2130392
(-)
ZMP-ZTP
2129413-2130295 (-)
Kfla_2036
Metallophosphoesterase
Kfla_2036
Single gene
DOOR ID:
2756795
Kfla_2036
View Structure
7
2859935-2860014
(-)
cobalamin
2859080-2859821 (-)
Kfla_2711
Kfla_2711
Operon
DOOR ID:
651466
Kfla_2707,
Kfla_2708,
Kfla_2709,
Kfla_2710,
Kfla_2711
View Structure
8
2869479-2869645
(+)
ydaO-yuaA
2869651-2871460 (+)
Kfla_2723
Kfla_2723
Single gene
DOOR ID:
2757064
Kfla_2723
View Structure
9
3177486-3177599
(-)
SAM-IV
3176104-3177469 (-)
Kfla_2985
Cysteine desulfurase
Kfla_2985
Single gene
DOOR ID:
2757140
Kfla_2985
View Structure
10
3334921-3334988
(+)
cobalamin
3335044-3338791 (+)
Kfla_3121
Cobaltochelatase; CobN subunit
Kfla_3121
Single gene
DOOR ID:
2757189
Kfla_3121
View Structure
11
3341429-3341559
(+)
cobalamin
3341631-3344145 (+)
Kfla_3125
von Willebrand factor type A
Kfla_3125
Operon
DOOR ID:
651560
Kfla_3125,
Kfla_3126,
Kfla_3127,
Kfla_3128,
Kfla_3129
View Structure
12
3388456-3388551
(+)
glycine
3388648-3391504 (+)
Kfla_3178
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Kfla_3178
Operon
DOOR ID:
651570
Kfla_3178,
Kfla_3179,
Kfla_3180
View Structure
13
3452782-3452870
(+)
ZMP-ZTP
3452899-3453778 (+)
Kfla_3232
Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]
Kfla_3232
Single gene
DOOR ID:
2757220
Kfla_3232
View Structure
14
3573001-3573082
(-)
ZMP-ZTP
3571522-3572971 (-)
Kfla_3330
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Kfla_3330
Single gene
DOOR ID:
2757246
Kfla_3330
View Structure
15
5268485-5268569
(+)
ZMP-ZTP
5268587-5269649 (+)
Kfla_4890
IMP cyclohydrolase (0)
Kfla_4890
Single gene
DOOR ID:
2757832
Kfla_4890
View Structure
16
5539959-5540091
(-)
FMN
5538807-5539842 (-)
Kfla_5137
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Kfla_5137
Operon
DOOR ID:
651971
Kfla_5133,
Kfla_5134,
Kfla_5135,
Kfla_5136,
Kfla_5137
View Structure
17
6254671-6254749
(-)
SAH
6251053-6254653 (-)
Kfla_5817
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Kfla_5817
Operon
DOOR ID:
652115
Kfla_5815,
Kfla_5816,
Kfla_5817
View Structure
18
7009628-7009731
(-)
glycine
7008177-7009551 (-)
Kfla_6539
L-serine dehydratase 1 (7)
Kfla_6539
Single gene
DOOR ID:
2758427
Kfla_6539
View Structure
19
7228188-7228318
(-)
ykkC-yxkD
7227283-7228150 (-)
Kfla_6754
Kfla_6754
Single gene
DOOR ID:
2758509
Kfla_6754
View Structure
Genome:
Kribbella flavida DSM 17836
(
NC_013729.1
);
Phylum:
Actinobacteria
a:20:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"189067-189194";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"190609-191290";i:10;s:1:"+";i:11;s:9:"Kfla_0180";i:12;s:25:"Methyltransferase type 11";i:13;s:9:"Kfla_0180";i:14;s:11:"Single gene";i:15;s:7:"2756167";i:16;s:9:"Kfla_0180";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"627138-627330";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"627359-628385";i:10;s:1:"+";i:11;s:9:"Kfla_0598";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Kfla_0598";i:14;s:6:"Operon";i:15;s:6:"651002";i:16;s:39:"Kfla_0598;Kfla_0599;Kfla_0600;Kfla_0601";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"663493-663684";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"662647-663493";i:10;s:1:"-";i:11;s:9:"Kfla_0631";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Kfla_0631";i:14;s:11:"Single gene";i:15;s:7:"2756312";i:16;s:9:"Kfla_0631";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1016372-1016535";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1018211-1019192";i:10;s:1:"+";i:11;s:9:"Kfla_0954";i:12;s:0:"";i:13;s:9:"Kfla_0954";i:14;s:6:"Operon";i:15;s:6:"651086";i:16;s:19:"Kfla_0953;Kfla_0954";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1289540-1289681";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1289691-1290960";i:10;s:1:"+";i:11;s:9:"Kfla_1225";i:12;s:18:"Threonine synthase";i:13;s:9:"Kfla_1225";i:14;s:6:"Operon";i:15;s:6:"651150";i:16;s:19:"Kfla_1225;Kfla_1226";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2130317-2130392";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2129413-2130295";i:10;s:1:"-";i:11;s:9:"Kfla_2036";i:12;s:22:"Metallophosphoesterase";i:13;s:9:"Kfla_2036";i:14;s:11:"Single gene";i:15;s:7:"2756795";i:16;s:9:"Kfla_2036";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2859935-2860014";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2859080-2859821";i:10;s:1:"-";i:11;s:9:"Kfla_2711";i:12;s:0:"";i:13;s:9:"Kfla_2711";i:14;s:6:"Operon";i:15;s:6:"651466";i:16;s:49:"Kfla_2707;Kfla_2708;Kfla_2709;Kfla_2710;Kfla_2711";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2869479-2869645";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2869651-2871460";i:10;s:1:"+";i:11;s:9:"Kfla_2723";i:12;s:0:"";i:13;s:9:"Kfla_2723";i:14;s:11:"Single gene";i:15;s:7:"2757064";i:16;s:9:"Kfla_2723";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3177486-3177599";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3176104-3177469";i:10;s:1:"-";i:11;s:9:"Kfla_2985";i:12;s:21:"Cysteine desulfurase ";i:13;s:9:"Kfla_2985";i:14;s:11:"Single gene";i:15;s:7:"2757140";i:16;s:9:"Kfla_2985";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3334921-3334988";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3335044-3338791";i:10;s:1:"+";i:11;s:9:"Kfla_3121";i:12;s:31:"Cobaltochelatase; CobN subunit ";i:13;s:9:"Kfla_3121";i:14;s:11:"Single gene";i:15;s:7:"2757189";i:16;s:9:"Kfla_3121";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3341429-3341559";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3341631-3344145";i:10;s:1:"+";i:11;s:9:"Kfla_3125";i:12;s:28:"von Willebrand factor type A";i:13;s:9:"Kfla_3125";i:14;s:6:"Operon";i:15;s:6:"651560";i:16;s:49:"Kfla_3125;Kfla_3126;Kfla_3127;Kfla_3128;Kfla_3129";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3388456-3388551";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3388648-3391504";i:10;s:1:"+";i:11;s:9:"Kfla_3178";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Kfla_3178";i:14;s:6:"Operon";i:15;s:6:"651570";i:16;s:29:"Kfla_3178;Kfla_3179;Kfla_3180";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3452782-3452870";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3452899-3453778";i:10;s:1:"+";i:11;s:9:"Kfla_3232";i:12;s:78:"Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]";i:13;s:9:"Kfla_3232";i:14;s:11:"Single gene";i:15;s:7:"2757220";i:16;s:9:"Kfla_3232";i:17;s:189:"histidine biosynthetic process [GO:0000105]; methionine biosynthetic process [GO:0009086]; purine nucleotide biosynthetic process [GO:0006164]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3573001-3573082";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3571522-3572971";i:10;s:1:"-";i:11;s:9:"Kfla_3330";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Kfla_3330";i:14;s:11:"Single gene";i:15;s:7:"2757246";i:16;s:9:"Kfla_3330";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5268485-5268569";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"5268587-5269649";i:10;s:1:"+";i:11;s:9:"Kfla_4890";i:12;s:22:"IMP cyclohydrolase (0)";i:13;s:9:"Kfla_4890";i:14;s:11:"Single gene";i:15;s:7:"2757832";i:16;s:9:"Kfla_4890";i:17;s:51:"purine nucleotide biosynthetic process [GO:0006164]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5539959-5540091";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"5538807-5539842";i:10;s:1:"-";i:11;s:9:"Kfla_5137";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Kfla_5137";i:14;s:6:"Operon";i:15;s:6:"651971";i:16;s:49:"Kfla_5133;Kfla_5134;Kfla_5135;Kfla_5136;Kfla_5137";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6254671-6254749";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"6251053-6254653";i:10;s:1:"-";i:11;s:9:"Kfla_5817";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:9:"Kfla_5817";i:14;s:6:"Operon";i:15;s:6:"652115";i:16;s:29:"Kfla_5815;Kfla_5816;Kfla_5817";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"7009628-7009731";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"7008177-7009551";i:10;s:1:"-";i:11;s:9:"Kfla_6539";i:12;s:26:"L-serine dehydratase 1 (7)";i:13;s:9:"Kfla_6539";i:14;s:11:"Single gene";i:15;s:7:"2758427";i:16;s:9:"Kfla_6539";i:17;s:28:"gluconeogenesis [GO:0006094]";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_013729.1";i:2;s:28:"Kribbella flavida DSM 17836 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"7228188-7228318";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"7227283-7228150";i:10;s:1:"-";i:11;s:9:"Kfla_6754";i:12;s:0:"";i:13;s:9:"Kfla_6754";i:14;s:11:"Single gene";i:15;s:7:"2758509";i:16;s:9:"Kfla_6754";i:17;s:0:"";i:18;s:15:"View Structure ";}}