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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
275666-275825
(+)
ydaO-yuaA
276707-277724 (-)
RMDY18_02670
RMDY18_02670
Single gene
DOOR ID:
2748848
RMDY18_02670
View Structure
2
1256842-1257022
(-)
TPP
1253717-1254686 (-)
RMDY18_11320
23S rRNA methylase
RMDY18_11320
Single gene
DOOR ID:
2749312
RMDY18_11320
View Structure
3
1300292-1300489
(-)
FMN
1299214-1300162 (-)
RMDY18_11690
Nicotinamide mononucleotide transporter
RMDY18_11690
Operon
DOOR ID:
648029
RMDY18_11680,
RMDY18_11690
View Structure
4
1700498-1700610
(-)
SAM-IV
1697498-1698842 (-)
RMDY18_15160
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
RMDY18_15160
Single gene
DOOR ID:
2749533
RMDY18_15160
View Structure
5
1866529-1866663
(-)
SAM-IV
1865820-1866255 (-)
RMDY18_16650
Predicted nucleic acid-binding protein
RMDY18_16650
Operon
DOOR ID:
648111
RMDY18_16650,
RMDY18_16660
View Structure
6
1906742-1906842
(-)
TPP
1906050-1906683 (-)
RMDY18_16950
Predicted membrane protein
RMDY18_16950
Single gene
DOOR ID:
2749646
RMDY18_16950
View Structure
7
2063355-2063463
(-)
SAM-IV
2061812-2063240 (-)
RMDY18_18290
Coenzyme F420-dependent N5;N10-methylene tetrahydromethanopterin reductase
RMDY18_18290
Single gene
DOOR ID:
2749730
RMDY18_18290
View Structure
8
2063639-2063735
(+)
SAM
2063739-2064576 (+)
RMDY18_18300
ABC-type nitrate/sulfonate/bicarbonate transport system; ATPase component
RMDY18_18300
Operon
DOOR ID:
648134
RMDY18_18300,
RMDY18_18310,
RMDY18_18330
View Structure
9
2150564-2150680
(+)
SAM
2150791-2151703 (+)
RMDY18_19100
Methylenetetrahydrofolate reductase (0)
RMDY18_19100
Operon
DOOR ID:
648144
RMDY18_19100,
RMDY18_19110
View Structure
Genome:
Rothia mucilaginosa DY-18
(
NC_013715.1
);
Phylum:
Actinobacteria
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