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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
85630-85729
(-)
TPP
84615-85599 (-)
ECSF_0079
ECSF_0079
Operon
DOOR ID:
645437
ECSF_0077,
ECSF_0078,
ECSF_0079
View Structure
2
788294-788438
(+)
MOCO
789436-789949 (+)
ECSF_0708
ECSF_0708
Operon
DOOR ID:
645570
ECSF_0707,
ECSF_0708,
ECSF_0709,
ECSF_0710,
ECSF_0711
View Structure
3
1793880-1793981
(+)
yybP-ykoY
1794111-1794678 (+)
ECSF_1677
ECSF_1677
Single gene
DOOR ID:
2744405
ECSF_1677
View Structure
4
2132912-2133008
(-)
TPP
2132088-2132877 (-)
ECSF_1986
ECSF_1986
Operon
DOOR ID:
645809
ECSF_1983,
ECSF_1984,
ECSF_1985,
ECSF_1986
View Structure
5
3158516-3158664
(-)
FMN
3157758-3158412 (-)
ECSF_2890
ECSF_2890
Single gene
DOOR ID:
2744772
ECSF_2890
View Structure
6
4156852-4157042
(+)
cobalamin
4157106-4158951 (+)
ECSF_3829
ECSF_3829
Operon
DOOR ID:
646206
ECSF_3829,
ECSF_3830
View Structure
7
4188449-4188549
(-)
TPP
4186472-4188368 (-)
ECSF_3848
ECSF_3848
Operon
DOOR ID:
646211
ECSF_3843,
ECSF_3844,
ECSF_3845,
ECSF_3846,
ECSF_3847,
ECSF_3848
View Structure
8
4229969-4230165
(-)
lysine
4228527-4229877 (-)
ECSF_3881
ECSF_3881
Single gene
DOOR ID:
2745079
ECSF_3881
View Structure
9
4408298-4408344
(+)
mini-ykkC
4408361-4408679 (+)
ECSF_4038
ECSF_4038
Single gene
DOOR ID:
2745139
ECSF_4038
View Structure
10
4505818-4505933
(+)
Mg sensor
4506026-4508723 (+)
ECSF_4131
ECSF_4131
Single gene
DOOR ID:
2745178
ECSF_4131
View Structure
Genome:
Escherichia coli SE15
(
NC_013654.1
);
Phylum:
Gammaproteobacteria
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