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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
71566-71660
(-)
ykkC-yxkD
70431-71487 (-)
Dd586_0059
ABC transporter periplasmic binding protein; urea carboxylase region
Dd586_0059
Operon
DOOR ID:
642579
Dd586_0055,
Dd586_0056,
Dd586_0057,
Dd586_0058,
Dd586_0059
View Structure
2
268101-268216
(-)
TPP
266002-267964 (-)
Dd586_0231
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Dd586_0231
Operon
DOOR ID:
642619
Dd586_0226,
Dd586_0227,
Dd586_0228,
Dd586_0229,
Dd586_0230,
Dd586_0231
View Structure
3
911266-911428
(+)
FMN
911554-912208 (+)
Dd586_0823
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Dd586_0823
Single gene
DOOR ID:
2737932
Dd586_0823
View Structure
4
1120640-1120757
(-)
Mg sensor
1117827-1120539 (-)
Dd586_1008
Magnesium-translocating P-type ATPase
Dd586_1008
Single gene
DOOR ID:
2738016
Dd586_1008
View Structure
5
1258083-1258144
(-)
fluoride
1257633-1258017 (-)
Dd586_1127
Putative fluoride ion transporter CrcB
Dd586_1127
Single gene
DOOR ID:
2738060
Dd586_1127
View Structure
6
2231966-2232106
(-)
yybP-ykoY
2231342-2231915 (-)
Dd586_1970
Putative manganese efflux pump MntP
Dd586_1970
Single gene
DOOR ID:
2738419
Dd586_1970
View Structure
7
2441253-2441347
(-)
glycine
2440610-2441231 (-)
Dd586_2152
Dd586_2152
Single gene
DOOR ID:
2738511
Dd586_2152
View Structure
8
2782603-2782747
(-)
MOCO
2781068-2781581 (-)
Dd586_2472
Molybdenum cofactor biosynthesis protein B
Dd586_2472
Operon
DOOR ID:
643039
Dd586_2469,
Dd586_2470,
Dd586_2471,
Dd586_2472,
Dd586_2473
View Structure
9
2898313-2898482
(-)
ykoK
2897212-2898238 (-)
Dd586_2570
MgtE integral membrane region
Dd586_2570
Single gene
DOOR ID:
2738713
Dd586_2570
View Structure
10
3401099-3401199
(-)
TPP
3400269-3401064 (-)
Dd586_3012
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Dd586_3012
Operon
DOOR ID:
643130
Dd586_3011,
Dd586_3012
View Structure
11
4063611-4063765
(+)
TPP
4063808-4064792 (+)
Dd586_3556
Thiamine ABC transporter; periplasmic binding protein
Dd586_3556
Operon
DOOR ID:
643233
Dd586_3556,
Dd586_3557,
Dd586_3558
View Structure
12
4222900-4223097
(+)
lysine
4223214-4224579 (+)
Dd586_3687
Aspartokinase
Dd586_3687
Single gene
DOOR ID:
2739168
Dd586_3687
View Structure
13
4489327-4489526
(-)
cobalamin
4487390-4489256 (-)
Dd586_3924
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
Dd586_3924
Operon
DOOR ID:
643293
Dd586_3923,
Dd586_3924
View Structure
Genome:
Dickeya dadantii Ech586
(
NC_013592.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013592.1";i:2;s:24:"Dickeya dadantii Ech586 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"911266-911428";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"911554-912208";i:10;s:1:"+";i:11;s:10:"Dd586_0823";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"Dd586_0823";i:14;s:11:"Single gene";i:15;s:7:"2737932";i:16;s:10:"Dd586_0823";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013592.1";i:2;s:24:"Dickeya dadantii Ech586 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1120640-1120757";i:6;s:1:"-";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"1117827-1120539";i:10;s:1:"-";i:11;s:10:"Dd586_1008";i:12;s:37:"Magnesium-translocating P-type ATPase";i:13;s:10:"Dd586_1008";i:14;s:11:"Single gene";i:15;s:7:"2738016";i:16;s:10:"Dd586_1008";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013592.1";i:2;s:24:"Dickeya dadantii Ech586 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1258083-1258144";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1257633-1258017";i:10;s:1:"-";i:11;s:10:"Dd586_1127";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"Dd586_1127";i:14;s:11:"Single gene";i:15;s:7:"2738060";i:16;s:10:"Dd586_1127";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013592.1";i:2;s:24:"Dickeya dadantii Ech586 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2231966-2232106";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2231342-2231915";i:10;s:1:"-";i:11;s:10:"Dd586_1970";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:10:"Dd586_1970";i:14;s:11:"Single gene";i:15;s:7:"2738419";i:16;s:10:"Dd586_1970";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013592.1";i:2;s:24:"Dickeya dadantii Ech586 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2441253-2441347";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2440610-2441231";i:10;s:1:"-";i:11;s:10:"Dd586_2152";i:12;s:0:"";i:13;s:10:"Dd586_2152";i:14;s:11:"Single gene";i:15;s:7:"2738511";i:16;s:10:"Dd586_2152";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013592.1";i:2;s:24:"Dickeya dadantii Ech586 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2782603-2782747";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2781068-2781581";i:10;s:1:"-";i:11;s:10:"Dd586_2472";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"Dd586_2472";i:14;s:6:"Operon";i:15;s:6:"643039";i:16;s:54:"Dd586_2469;Dd586_2470;Dd586_2471;Dd586_2472;Dd586_2473";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013592.1";i:2;s:24:"Dickeya dadantii Ech586 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2898313-2898482";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2897212-2898238";i:10;s:1:"-";i:11;s:10:"Dd586_2570";i:12;s:29:"MgtE integral membrane region";i:13;s:10:"Dd586_2570";i:14;s:11:"Single gene";i:15;s:7:"2738713";i:16;s:10:"Dd586_2570";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013592.1";i:2;s:24:"Dickeya dadantii Ech586 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3401099-3401199";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3400269-3401064";i:10;s:1:"-";i:11;s:10:"Dd586_3012";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"Dd586_3012";i:14;s:6:"Operon";i:15;s:6:"643130";i:16;s:21:"Dd586_3011;Dd586_3012";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013592.1";i:2;s:24:"Dickeya dadantii Ech586 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4063611-4063765";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4063808-4064792";i:10;s:1:"+";i:11;s:10:"Dd586_3556";i:12;s:53:"Thiamine ABC transporter; periplasmic binding protein";i:13;s:10:"Dd586_3556";i:14;s:6:"Operon";i:15;s:6:"643233";i:16;s:32:"Dd586_3556;Dd586_3557;Dd586_3558";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013592.1";i:2;s:24:"Dickeya dadantii Ech586 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4222900-4223097";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4223214-4224579";i:10;s:1:"+";i:11;s:10:"Dd586_3687";i:12;s:14:"Aspartokinase ";i:13;s:10:"Dd586_3687";i:14;s:11:"Single gene";i:15;s:7:"2739168";i:16;s:10:"Dd586_3687";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013592.1";i:2;s:24:"Dickeya dadantii Ech586 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4489327-4489526";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4487390-4489256";i:10;s:1:"-";i:11;s:10:"Dd586_3924";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"Dd586_3924";i:14;s:6:"Operon";i:15;s:6:"643293";i:16;s:21:"Dd586_3923;Dd586_3924";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
