About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
133384-133576
(+)
cobalamin
133688-134720 (+)
adh2
Alcohol dehydrogenase; zinc-containing
DhcVS_132
Operon
DOOR ID:
642257
DhcVS_132
(adh2)
View Structure
2
205125-205209
(+)
c-di-GMP-II
205315-207277 (+)
DhcVS_205
DhcVS_205
Single gene
DOOR ID:
2737319
DhcVS_205
View Structure
3
560181-560379
(+)
cobalamin
560537-561596 (+)
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
DhcVS_595
Operon
DOOR ID:
642352
DhcVS_595
(cobT)
,
DhcVS_596
(cobS)
,
DhcVS_597
(gpmB)
,
DhcVS_598
(cobU)
View Structure
4
637423-637518
(-)
TPP
636075-637371 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
DhcVS_681
Operon
DOOR ID:
642366
DhcVS_679,
DhcVS_680,
DhcVS_681
(thiC)
View Structure
5
1256304-1256445
(-)
cobalamin
1255424-1256192 (-)
rdhF
CbiZ domain protein
DhcVS_1356
Single gene
DOOR ID:
2737561
DhcVS_1356
(rdhF)
View Structure
Genome:
Dehalococcoides sp. VS
(
NC_013552.1
);
Phylum:
Chloroflexi
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013552.1";i:2;s:23:"Dehalococcoides sp. VS ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"133384-133576";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"133688-134720";i:10;s:1:"+";i:11;s:4:"adh2";i:12;s:38:"Alcohol dehydrogenase; zinc-containing";i:13;s:9:"DhcVS_132";i:14;s:6:"Operon";i:15;s:6:"642257";i:16;s:15:"DhcVS_132(adh2)";i:17;s:40:"oxidation-reduction process [GO:0055114]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013552.1";i:2;s:23:"Dehalococcoides sp. VS ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"205125-205209";i:6;s:1:"+";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:13:"205315-207277";i:10;s:1:"+";i:11;s:9:"DhcVS_205";i:12;s:0:"";i:13;s:9:"DhcVS_205";i:14;s:11:"Single gene";i:15;s:7:"2737319";i:16;s:9:"DhcVS_205";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013552.1";i:2;s:23:"Dehalococcoides sp. VS ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"560181-560379";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"560537-561596";i:10;s:1:"+";i:11;s:4:"cobT";i:12;s:126:"Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)";i:13;s:9:"DhcVS_595";i:14;s:6:"Operon";i:15;s:6:"642352";i:16;s:63:"DhcVS_595(cobT);DhcVS_596(cobS);DhcVS_597(gpmB);DhcVS_598(cobU)";i:17;s:89:"cobalamin biosynthetic process [GO:0009236]; nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013552.1";i:2;s:23:"Dehalococcoides sp. VS ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"637423-637518";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"636075-637371";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"DhcVS_681";i:14;s:6:"Operon";i:15;s:6:"642366";i:16;s:35:"DhcVS_679;DhcVS_680;DhcVS_681(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013552.1";i:2;s:23:"Dehalococcoides sp. VS ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1256304-1256445";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1255424-1256192";i:10;s:1:"-";i:11;s:4:"rdhF";i:12;s:19:"CbiZ domain protein";i:13;s:10:"DhcVS_1356";i:14;s:11:"Single gene";i:15;s:7:"2737561";i:16;s:16:"DhcVS_1356(rdhF)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
