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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
47290-47392
(+)
glycine
47552-50684 (+)
Xcel_0044
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Xcel_0044
Operon
DOOR ID:
641278
Xcel_0044,
Xcel_0045,
Xcel_0046
View Structure
2
212723-212827
(+)
TPP
212896-214057 (+)
Xcel_0178
ABC transporter; periplasmic binding protein; thiB subfamily
Xcel_0178
Operon
DOOR ID:
641309
Xcel_0178,
Xcel_0179,
Xcel_0180
View Structure
3
283060-283175
(+)
SAM-IV
283209-283665 (+)
Xcel_0238
Xcel_0238
Single gene
DOOR ID:
2735902
Xcel_0238
View Structure
4
288727-288843
(-)
SAM-IV
287857-288691 (-)
Xcel_0243
Xcel_0243
Operon
DOOR ID:
641325
Xcel_0243,
Xcel_0244,
Xcel_0245
View Structure
5
795532-795633
(+)
ZMP-ZTP
795677-797318 (+)
Xcel_0738
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Xcel_0738
Single gene
DOOR ID:
2736021
Xcel_0738
View Structure
6
818668-818778
(+)
ZMP-ZTP
818853-820140 (+)
Xcel_0754
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Xcel_0754
Operon
DOOR ID:
641424
Xcel_0754,
Xcel_0755
View Structure
7
1578226-1578335
(+)
TPP
1580079-1580748 (+)
Xcel_1455
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
Xcel_1455
Operon
DOOR ID:
641601
Xcel_1452,
Xcel_1453,
Xcel_1454,
Xcel_1455,
Xcel_1456,
Xcel_1457,
Xcel_1458
View Structure
8
1746573-1746690
(+)
SAM-IV
1746699-1747008 (+)
Xcel_1610
Xcel_1610
Operon
DOOR ID:
641635
Xcel_1610,
Xcel_1611
View Structure
9
1869901-1870036
(+)
FMN
1870132-1871185 (+)
Xcel_1726
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Xcel_1726
Operon
DOOR ID:
641661
Xcel_1726,
Xcel_1727,
Xcel_1728,
Xcel_1729
View Structure
10
3159638-3159790
(-)
ydaO-yuaA
3158879-3159635 (-)
Xcel_2843
NLP/P60 protein
Xcel_2843
Single gene
DOOR ID:
2736590
Xcel_2843
View Structure
11
3160801-3160948
(-)
ydaO-yuaA
3160017-3160797 (-)
Xcel_2844
NLP/P60 protein
Xcel_2844
Single gene
DOOR ID:
2736591
Xcel_2844
View Structure
12
3431756-3431867
(-)
SAM-IV
3430464-3431724 (-)
Xcel_3097
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein
Xcel_3097
Operon
DOOR ID:
641965
Xcel_3096,
Xcel_3097
View Structure
13
3458085-3458200
(-)
SAM-IV
3456643-3458074 (-)
Xcel_3118
Cysteine desulfurase
Xcel_3118
Single gene
DOOR ID:
2736682
Xcel_3118
View Structure
14
3458323-3458409
(+)
SAM
3458414-3458897 (+)
Xcel_3119
Rhodanese domain protein
Xcel_3119
Operon
DOOR ID:
641971
Xcel_3119,
Xcel_3120
View Structure
15
3512257-3512369
(-)
SAM-IV
3510610-3512200 (-)
Xcel_3169
Extracellular solute-binding protein family 5
Xcel_3169
Operon
DOOR ID:
641982
Xcel_3165,
Xcel_3166,
Xcel_3167,
Xcel_3168,
Xcel_3169
View Structure
Genome:
Xylanimonas cellulosilytica DSM 15894
(
NC_013530.1
);
Phylum:
Actinobacteria
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"47290-47392";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:11:"47552-50684";i:10;s:1:"+";i:11;s:9:"Xcel_0044";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Xcel_0044";i:14;s:6:"Operon";i:15;s:6:"641278";i:16;s:29:"Xcel_0044;Xcel_0045;Xcel_0046";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"212723-212827";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"212896-214057";i:10;s:1:"+";i:11;s:9:"Xcel_0178";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:9:"Xcel_0178";i:14;s:6:"Operon";i:15;s:6:"641309";i:16;s:29:"Xcel_0178;Xcel_0179;Xcel_0180";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"283060-283175";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"283209-283665";i:10;s:1:"+";i:11;s:9:"Xcel_0238";i:12;s:0:"";i:13;s:9:"Xcel_0238";i:14;s:11:"Single gene";i:15;s:7:"2735902";i:16;s:9:"Xcel_0238";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"288727-288843";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"287857-288691";i:10;s:1:"-";i:11;s:9:"Xcel_0243";i:12;s:0:"";i:13;s:9:"Xcel_0243";i:14;s:6:"Operon";i:15;s:6:"641325";i:16;s:29:"Xcel_0243;Xcel_0244;Xcel_0245";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"795532-795633";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"795677-797318";i:10;s:1:"+";i:11;s:9:"Xcel_0738";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:9:"Xcel_0738";i:14;s:11:"Single gene";i:15;s:7:"2736021";i:16;s:9:"Xcel_0738";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"818668-818778";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"818853-820140";i:10;s:1:"+";i:11;s:9:"Xcel_0754";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Xcel_0754";i:14;s:6:"Operon";i:15;s:6:"641424";i:16;s:19:"Xcel_0754;Xcel_0755";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1578226-1578335";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1580079-1580748";i:10;s:1:"+";i:11;s:9:"Xcel_1455";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:9:"Xcel_1455";i:14;s:6:"Operon";i:15;s:6:"641601";i:16;s:69:"Xcel_1452;Xcel_1453;Xcel_1454;Xcel_1455;Xcel_1456;Xcel_1457;Xcel_1458";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1746573-1746690";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1746699-1747008";i:10;s:1:"+";i:11;s:9:"Xcel_1610";i:12;s:0:"";i:13;s:9:"Xcel_1610";i:14;s:6:"Operon";i:15;s:6:"641635";i:16;s:19:"Xcel_1610;Xcel_1611";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1869901-1870036";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1870132-1871185";i:10;s:1:"+";i:11;s:9:"Xcel_1726";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Xcel_1726";i:14;s:6:"Operon";i:15;s:6:"641661";i:16;s:39:"Xcel_1726;Xcel_1727;Xcel_1728;Xcel_1729";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3159638-3159790";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3158879-3159635";i:10;s:1:"-";i:11;s:9:"Xcel_2843";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Xcel_2843";i:14;s:11:"Single gene";i:15;s:7:"2736590";i:16;s:9:"Xcel_2843";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3160801-3160948";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3160017-3160797";i:10;s:1:"-";i:11;s:9:"Xcel_2844";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Xcel_2844";i:14;s:11:"Single gene";i:15;s:7:"2736591";i:16;s:9:"Xcel_2844";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3431756-3431867";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3430464-3431724";i:10;s:1:"-";i:11;s:9:"Xcel_3097";i:12;s:87:"Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein";i:13;s:9:"Xcel_3097";i:14;s:6:"Operon";i:15;s:6:"641965";i:16;s:19:"Xcel_3096;Xcel_3097";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3458085-3458200";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3456643-3458074";i:10;s:1:"-";i:11;s:9:"Xcel_3118";i:12;s:21:"Cysteine desulfurase ";i:13;s:9:"Xcel_3118";i:14;s:11:"Single gene";i:15;s:7:"2736682";i:16;s:9:"Xcel_3118";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3458323-3458409";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3458414-3458897";i:10;s:1:"+";i:11;s:9:"Xcel_3119";i:12;s:24:"Rhodanese domain protein";i:13;s:9:"Xcel_3119";i:14;s:6:"Operon";i:15;s:6:"641971";i:16;s:19:"Xcel_3119;Xcel_3120";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013530.1";i:2;s:38:"Xylanimonas cellulosilytica DSM 15894 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3512257-3512369";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3510610-3512200";i:10;s:1:"-";i:11;s:9:"Xcel_3169";i:12;s:45:"Extracellular solute-binding protein family 5";i:13;s:9:"Xcel_3169";i:14;s:6:"Operon";i:15;s:6:"641982";i:16;s:49:"Xcel_3165;Xcel_3166;Xcel_3167;Xcel_3168;Xcel_3169";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}}