About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
388010-388096
(+)
c-di-GMP-II
388152-389829 (+)
Tter_0358
Tter_0358
Single gene
DOOR ID:
2735149
Tter_0358
View Structure
2
394557-394631
(-)
c-di-GMP-I
393253-394507 (-)
Tter_0361
Uncharacterized protein
Tter_0361
single gene
DOOR ID:
2735150
Tter_0361
View Structure
3
433575-433696
(-)
FMN
432602-433418 (-)
Tter_0403
Binding-protein-dependent transport systems inner membrane component
Tter_0403
Operon
DOOR ID:
640731
Tter_0402,
Tter_0403
View Structure
4
523668-523798
(-)
ydaO-yuaA
522297-523584 (-)
Tter_0472
CDP-alcohol phosphatidyltransferase
Tter_0472
Operon
DOOR ID:
640750
Tter_0469,
Tter_0470,
Tter_0471,
Tter_0472
View Structure
5
560191-560344
(+)
glmS
560432-562214 (+)
Tter_0502
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
Tter_0502
Operon
DOOR ID:
640759
Tter_0502,
Tter_0503,
Tter_0504,
Tter_0505
View Structure
6
675485-675546
(-)
fluoride
674701-675430 (-)
Tter_0616
Tter_0616
Operon
DOOR ID:
640781
Tter_0613,
Tter_0614,
Tter_0615,
Tter_0616
View Structure
7
705078-705199
(+)
TPP
705263-705956 (+)
Tter_0644
Aminopyrimidine aminohydrolase
Tter_0644
Operon
DOOR ID:
640789
Tter_0644,
Tter_0645,
Tter_0646,
Tter_0647,
Tter_0648
View Structure
8
900813-900915
(+)
SAM
901039-902191 (+)
Tter_0842
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Tter_0842
Operon
DOOR ID:
640828
Tter_0842,
Tter_0843,
Tter_0844,
Tter_0845
View Structure
9
1288983-1289084
(+)
SAM
1289166-1291056 (+)
Tter_1187
Homocysteine S-methyltransferase
Tter_1187
Operon
DOOR ID:
640903
Tter_1187,
Tter_1188
View Structure
10
1326646-1326767
(+)
TPP
1326817-1327606 (+)
Tter_1220
ABC transporter related protein
Tter_1220
Operon
DOOR ID:
640912
Tter_1220,
Tter_1221,
Tter_1222
View Structure
11
1446629-1446760
(-)
ydaO-yuaA
1446290-1446509 (-)
Tter_1338
Tter_1338
Operon
DOOR ID:
640942
Tter_1336,
Tter_1337,
Tter_1338
View Structure
12
1547412-1547535
(-)
cobalamin
1546123-1547263 (-)
Tter_1421
Periplasmic binding protein
Tter_1421
Operon
DOOR ID:
640961
Tter_1419,
Tter_1420,
Tter_1421
View Structure
13
1684987-1685047
(+)
fluoride
1685102-1685474 (+)
Tter_1553
Putative fluoride ion transporter CrcB
Tter_1553
Operon
DOOR ID:
640987
Tter_1553,
Tter_1554
View Structure
Genome:
Thermobaculum terrenum ATCC BAA-798 chromosome I
(
NC_013525.1
);
Phylum:
unclassified Terrabacteria group
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:13:"388010-388096";i:6;s:1:"+";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:13:"388152-389829";i:10;s:1:"+";i:11;s:9:"Tter_0358";i:12;s:0:"";i:13;s:9:"Tter_0358";i:14;s:11:"Single gene";i:15;s:7:"2735149";i:16;s:9:"Tter_0358";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:13:"394557-394631";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"393253-394507";i:10;s:1:"-";i:11;s:9:"Tter_0361";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Tter_0361";i:14;s:11:"single gene";i:15;s:7:"2735150";i:16;s:9:"Tter_0361";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:13:"433575-433696";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"432602-433418";i:10;s:1:"-";i:11;s:9:"Tter_0403";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:9:"Tter_0403";i:14;s:6:"Operon";i:15;s:6:"640731";i:16;s:19:"Tter_0402;Tter_0403";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:13:"523668-523798";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"522297-523584";i:10;s:1:"-";i:11;s:9:"Tter_0472";i:12;s:35:"CDP-alcohol phosphatidyltransferase";i:13;s:9:"Tter_0472";i:14;s:6:"Operon";i:15;s:6:"640750";i:16;s:39:"Tter_0469;Tter_0470;Tter_0471;Tter_0472";i:17;s:46:"phospholipid biosynthetic process [GO:0008654]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:13:"560191-560344";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"560432-562214";i:10;s:1:"+";i:11;s:9:"Tter_0502";i:12;s:62:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing]";i:13;s:9:"Tter_0502";i:14;s:6:"Operon";i:15;s:6:"640759";i:16;s:39:"Tter_0502;Tter_0503;Tter_0504;Tter_0505";i:17;s:57:"carbohydrate derivative biosynthetic process [GO:1901137]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:13:"675485-675546";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"674701-675430";i:10;s:1:"-";i:11;s:9:"Tter_0616";i:12;s:0:"";i:13;s:9:"Tter_0616";i:14;s:6:"Operon";i:15;s:6:"640781";i:16;s:39:"Tter_0613;Tter_0614;Tter_0615;Tter_0616";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:13:"705078-705199";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"705263-705956";i:10;s:1:"+";i:11;s:9:"Tter_0644";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:9:"Tter_0644";i:14;s:6:"Operon";i:15;s:6:"640789";i:16;s:49:"Tter_0644;Tter_0645;Tter_0646;Tter_0647;Tter_0648";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:13:"900813-900915";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"901039-902191";i:10;s:1:"+";i:11;s:9:"Tter_0842";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"Tter_0842";i:14;s:6:"Operon";i:15;s:6:"640828";i:16;s:39:"Tter_0842;Tter_0843;Tter_0844;Tter_0845";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:15:"1288983-1289084";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1289166-1291056";i:10;s:1:"+";i:11;s:9:"Tter_1187";i:12;s:32:"Homocysteine S-methyltransferase";i:13;s:9:"Tter_1187";i:14;s:6:"Operon";i:15;s:6:"640903";i:16;s:19:"Tter_1187;Tter_1188";i:17;s:41:"methionine metabolic process [GO:0006555]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:15:"1326646-1326767";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1326817-1327606";i:10;s:1:"+";i:11;s:9:"Tter_1220";i:12;s:31:"ABC transporter related protein";i:13;s:9:"Tter_1220";i:14;s:6:"Operon";i:15;s:6:"640912";i:16;s:29:"Tter_1220;Tter_1221;Tter_1222";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:15:"1446629-1446760";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1446290-1446509";i:10;s:1:"-";i:11;s:9:"Tter_1338";i:12;s:0:"";i:13;s:9:"Tter_1338";i:14;s:6:"Operon";i:15;s:6:"640942";i:16;s:29:"Tter_1336;Tter_1337;Tter_1338";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:15:"1547412-1547535";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1546123-1547263";i:10;s:1:"-";i:11;s:9:"Tter_1421";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Tter_1421";i:14;s:6:"Operon";i:15;s:6:"640961";i:16;s:29:"Tter_1419;Tter_1420;Tter_1421";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013525.1";i:2;s:48:"Thermobaculum terrenum ATCC BAA-798 chromosome I";i:3;s:32:"unclassified Terrabacteria group";i:4;s:7:"1859062";i:5;s:15:"1684987-1685047";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1685102-1685474";i:10;s:1:"+";i:11;s:9:"Tter_1553";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"Tter_1553";i:14;s:6:"Operon";i:15;s:6:"640987";i:16;s:19:"Tter_1553;Tter_1554";i:17;s:0:"";i:18;s:15:"View Structure ";}}