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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
185921-185977
(+)
SAH
187897-188062 (+)
Sthe_0163
50S ribosomal protein L34
Sthe_0163
Operon
DOOR ID:
639973
Sthe_0163,
Sthe_0164,
Sthe_0165
View Structure
2
1020317-1020441
(-)
cobalamin
1018659-1020183 (-)
Sthe_0929
Sthe_0929
Operon
DOOR ID:
640134
Sthe_0926,
Sthe_0927,
Sthe_0928,
Sthe_0929
View Structure
3
1231295-1231405
(+)
SAM
1231511-1232564 (+)
Sthe_1120
Methylthioribose-1-phosphate isomerase (M1Pi) (MTR-1-P isomerase) (3) (S-methyl-5-thioribose-1-phosphate isomerase)
Sthe_1120
Operon
DOOR ID:
640173
Sthe_1120,
Sthe_1121,
Sthe_1122,
Sthe_1123
View Structure
4
1432432-1432592
(+)
glmS
1432715-1434491 (+)
Sthe_1295
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
Sthe_1295
Operon
DOOR ID:
640208
Sthe_1295,
Sthe_1296,
Sthe_1297,
Sthe_1298
View Structure
5
1597141-1597273
(+)
FMN
1597441-1598329 (+)
Sthe_1453
Binding-protein-dependent transport systems inner membrane component
Sthe_1453
Operon
DOOR ID:
640241
Sthe_1453,
Sthe_1454
View Structure
6
1616372-1616477
(-)
SAM
1615048-1616026 (-)
Sthe_1469
Methionine import ATP-binding protein MetN
Sthe_1469
Operon
DOOR ID:
640244
Sthe_1467,
Sthe_1468,
Sthe_1469
View Structure
7
1639072-1639179
(-)
TPP
1638133-1638973 (-)
Sthe_1496
Phosphomethylpyrimidine kinase
Sthe_1496
Operon
DOOR ID:
640250
Sthe_1492,
Sthe_1493,
Sthe_1494,
Sthe_1495,
Sthe_1496
View Structure
8
1690841-1690942
(+)
SAM
1691348-1692473 (+)
Sthe_1542
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Sthe_1542
Single gene
DOOR ID:
2734159
Sthe_1542
View Structure
9
2034018-2034119
(-)
SAM
2032528-2033575 (-)
Sthe_1846
Sthe_1846
Single gene
DOOR ID:
2734288
Sthe_1846
View Structure
10
2186116-2186247
(+)
FMN
2186338-2187502 (+)
Sthe_1968
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Sthe_1968
Operon
DOOR ID:
640346
Sthe_1968,
Sthe_1969,
Sthe_1970,
Sthe_1971
View Structure
11
2685688-2685771
(-)
c-di-GMP-II
2684930-2685500 (-)
Sthe_2415
Sthe_2415
Single gene
DOOR ID:
2734558
Sthe_2415
View Structure
Genome:
Sphaerobacter thermophilus DSM 20745 chromosome I
(
NC_013523.1
);
Phylum:
Chloroflexi
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L-methionine salvage from S-adenosylmethionine [GO:0019284]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013523.1";i:2;s:49:"Sphaerobacter thermophilus DSM 20745 chromosome I";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1432432-1432592";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"1432715-1434491";i:10;s:1:"+";i:11;s:9:"Sthe_1295";i:12;s:62:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing]";i:13;s:9:"Sthe_1295";i:14;s:6:"Operon";i:15;s:6:"640208";i:16;s:39:"Sthe_1295;Sthe_1296;Sthe_1297;Sthe_1298";i:17;s:57:"carbohydrate derivative biosynthetic process [GO:1901137]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013523.1";i:2;s:49:"Sphaerobacter thermophilus DSM 20745 chromosome I";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1597141-1597273";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1597441-1598329";i:10;s:1:"+";i:11;s:9:"Sthe_1453";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:9:"Sthe_1453";i:14;s:6:"Operon";i:15;s:6:"640241";i:16;s:19:"Sthe_1453;Sthe_1454";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013523.1";i:2;s:49:"Sphaerobacter thermophilus DSM 20745 chromosome I";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1616372-1616477";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1615048-1616026";i:10;s:1:"-";i:11;s:9:"Sthe_1469";i:12;s:43:"Methionine import ATP-binding protein MetN ";i:13;s:9:"Sthe_1469";i:14;s:6:"Operon";i:15;s:6:"640244";i:16;s:29:"Sthe_1467;Sthe_1468;Sthe_1469";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013523.1";i:2;s:49:"Sphaerobacter thermophilus DSM 20745 chromosome I";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1639072-1639179";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1638133-1638973";i:10;s:1:"-";i:11;s:9:"Sthe_1496";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:9:"Sthe_1496";i:14;s:6:"Operon";i:15;s:6:"640250";i:16;s:49:"Sthe_1492;Sthe_1493;Sthe_1494;Sthe_1495;Sthe_1496";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013523.1";i:2;s:49:"Sphaerobacter thermophilus DSM 20745 chromosome I";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1690841-1690942";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1691348-1692473";i:10;s:1:"+";i:11;s:9:"Sthe_1542";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"Sthe_1542";i:14;s:11:"Single gene";i:15;s:7:"2734159";i:16;s:9:"Sthe_1542";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013523.1";i:2;s:49:"Sphaerobacter thermophilus DSM 20745 chromosome I";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"2034018-2034119";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2032528-2033575";i:10;s:1:"-";i:11;s:9:"Sthe_1846";i:12;s:0:"";i:13;s:9:"Sthe_1846";i:14;s:11:"Single gene";i:15;s:7:"2734288";i:16;s:9:"Sthe_1846";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013523.1";i:2;s:49:"Sphaerobacter thermophilus DSM 20745 chromosome I";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"2186116-2186247";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2186338-2187502";i:10;s:1:"+";i:11;s:9:"Sthe_1968";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Sthe_1968";i:14;s:6:"Operon";i:15;s:6:"640346";i:16;s:39:"Sthe_1968;Sthe_1969;Sthe_1970;Sthe_1971";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013523.1";i:2;s:49:"Sphaerobacter thermophilus DSM 20745 chromosome I";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"2685688-2685771";i:6;s:1:"-";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:15:"2684930-2685500";i:10;s:1:"-";i:11;s:9:"Sthe_2415";i:12;s:0:"";i:13;s:9:"Sthe_2415";i:14;s:11:"Single gene";i:15;s:7:"2734558";i:16;s:9:"Sthe_2415";i:17;s:0:"";i:18;s:15:"View Structure ";}}