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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
22518-22720
(+)
cobalamin
22889-24824 (+)
Taci_0020
Aconitate hydratase
Taci_0020
Single gene
DOOR ID:
2733242
Taci_0020
View Structure
2
65541-65701
(-)
cobalamin
64819-65446 (-)
Taci_0055
Precorrin-8X methylmutase CbiC/CobH
Taci_0055
Operon
DOOR ID:
639623
Taci_0054,
Taci_0055
View Structure
3
81325-81487
(+)
cobalamin
81615-82977 (+)
Taci_0070
Ethanolamine ammonia-lyase
Taci_0070
Operon
DOOR ID:
639628
Taci_0070,
Taci_0071,
Taci_0072,
Taci_0073,
Taci_0074
View Structure
4
297052-297158
(-)
TPP
296482-296995 (-)
Taci_0275
Proton-coupled thiamine transporter YuaJ
Taci_0275
Single gene
DOOR ID:
2733300
Taci_0275
View Structure
5
874538-874691
(+)
glmS
874723-876550 (+)
Taci_0841
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Taci_0841
Single gene
DOOR ID:
2733432
Taci_0841
View Structure
6
1198860-1198955
(-)
glycine
1198370-1198739 (-)
Taci_1140
GrdX protein
Taci_1140
Single gene
DOOR ID:
2733473
Taci_1140
View Structure
7
1405040-1405156
(+)
TPP
1405300-1406095 (+)
Taci_1358
Thiamine thiazole synthase
Taci_1358
Operon
DOOR ID:
639870
Taci_1358,
Taci_1359,
Taci_1360
View Structure
8
1579230-1579334
(-)
SAM
1576774-1577869 (-)
Taci_1505
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Taci_1505
Operon
DOOR ID:
639895
Taci_1505,
Taci_1506
View Structure
9
1587957-1588087
(+)
cobalamin
1588097-1589045 (+)
Taci_1518
Periplasmic binding protein
Taci_1518
Operon
DOOR ID:
639900
Taci_1518,
Taci_1519,
Taci_1520,
Taci_1521,
Taci_1522,
Taci_1523
View Structure
10
1587972-1588119
(+)
AdoCbl
1589041-1589818 (+)
Taci_1519
ABC transporter related protein
Taci_1519
Operon
DOOR ID:
639900
Taci_1518,
Taci_1519,
Taci_1520,
Taci_1521,
Taci_1522,
Taci_1523
View Structure
11
1594435-1594570
(-)
cobalamin
1592457-1594275 (-)
Taci_1524
TonB-dependent receptor plug
Taci_1524
Single gene
DOOR ID:
2733537
Taci_1524
View Structure
12
1718841-1718963
(-)
MOCO
1717912-1718752 (-)
Taci_1650
ABC transporter; periplasmic substrate-binding protein
Taci_1650
Operon
DOOR ID:
639920
Taci_1648,
Taci_1649,
Taci_1650
View Structure
13
1791705-1791810
(+)
TPP
1791874-1792690 (+)
Taci_1709
Phosphomethylpyrimidine kinase
Taci_1709
Operon
DOOR ID:
639934
Taci_1709,
Taci_1710,
Taci_1711,
Taci_1712,
Taci_1713
View Structure
Genome:
Thermanaerovibrio acidaminovorans DSM 6589
(
NC_013522.1
);
Phylum:
Synergistia
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carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013522.1";i:2;s:43:"Thermanaerovibrio acidaminovorans DSM 6589 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1198860-1198955";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1198370-1198739";i:10;s:1:"-";i:11;s:9:"Taci_1140";i:12;s:12:"GrdX protein";i:13;s:9:"Taci_1140";i:14;s:11:"Single gene";i:15;s:7:"2733473";i:16;s:9:"Taci_1140";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013522.1";i:2;s:43:"Thermanaerovibrio acidaminovorans DSM 6589 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1405040-1405156";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1405300-1406095";i:10;s:1:"+";i:11;s:9:"Taci_1358";i:12;s:27:"Thiamine thiazole synthase ";i:13;s:9:"Taci_1358";i:14;s:6:"Operon";i:15;s:6:"639870";i:16;s:29:"Taci_1358;Taci_1359;Taci_1360";i:17;s:142:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]; thiazole biosynthetic process [GO:0052837]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013522.1";i:2;s:43:"Thermanaerovibrio acidaminovorans DSM 6589 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1579230-1579334";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1576774-1577869";i:10;s:1:"-";i:11;s:9:"Taci_1505";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"Taci_1505";i:14;s:6:"Operon";i:15;s:6:"639895";i:16;s:19:"Taci_1505;Taci_1506";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013522.1";i:2;s:43:"Thermanaerovibrio acidaminovorans DSM 6589 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1587957-1588087";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1588097-1589045";i:10;s:1:"+";i:11;s:9:"Taci_1518";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Taci_1518";i:14;s:6:"Operon";i:15;s:6:"639900";i:16;s:59:"Taci_1518;Taci_1519;Taci_1520;Taci_1521;Taci_1522;Taci_1523";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013522.1";i:2;s:43:"Thermanaerovibrio acidaminovorans DSM 6589 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1587972-1588119";i:6;s:1:"+";i:7;s:6:"AdoCbl";i:8;s:0:"";i:9;s:15:"1589041-1589818";i:10;s:1:"+";i:11;s:9:"Taci_1519";i:12;s:31:"ABC transporter related protein";i:13;s:9:"Taci_1519";i:14;s:6:"Operon";i:15;s:6:"639900";i:16;s:59:"Taci_1518;Taci_1519;Taci_1520;Taci_1521;Taci_1522;Taci_1523";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013522.1";i:2;s:43:"Thermanaerovibrio acidaminovorans DSM 6589 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1594435-1594570";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1592457-1594275";i:10;s:1:"-";i:11;s:9:"Taci_1524";i:12;s:28:"TonB-dependent receptor plug";i:13;s:9:"Taci_1524";i:14;s:11:"Single gene";i:15;s:7:"2733537";i:16;s:9:"Taci_1524";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013522.1";i:2;s:43:"Thermanaerovibrio acidaminovorans DSM 6589 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1718841-1718963";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1717912-1718752";i:10;s:1:"-";i:11;s:9:"Taci_1650";i:12;s:54:"ABC transporter; periplasmic substrate-binding protein";i:13;s:9:"Taci_1650";i:14;s:6:"Operon";i:15;s:6:"639920";i:16;s:29:"Taci_1648;Taci_1649;Taci_1650";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013522.1";i:2;s:43:"Thermanaerovibrio acidaminovorans DSM 6589 ";i:3;s:11:"Synergistia";i:4;s:6:"649775";i:5;s:15:"1791705-1791810";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1791874-1792690";i:10;s:1:"+";i:11;s:9:"Taci_1709";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:9:"Taci_1709";i:14;s:6:"Operon";i:15;s:6:"639934";i:16;s:49:"Taci_1709;Taci_1710;Taci_1711;Taci_1712;Taci_1713";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}}