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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
46298-46409
(+)
glycine
46592-49595 (+)
Sked_00470
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Sked_00470
Operon
DOOR ID:
638832
Sked_00470,
Sked_00490,
Sked_00500
View Structure
2
46488-46533
(+)
glycine
46592-49595 (+)
Sked_00470
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Sked_00470
Operon
DOOR ID:
638832
Sked_00470,
Sked_00490,
Sked_00500
View Structure
3
61246-61350
(-)
SAM
60174-61239 (-)
Sked_00590
Methylenetetrahydrofolate reductase (0)
Sked_00590
Operon
DOOR ID:
638834
Sked_00580,
Sked_00590
View Structure
4
463812-463916
(+)
TPP
463968-465072 (+)
Sked_04160
ABC transporter periplasmic binding protein; thiB subfamily
Sked_04160
Operon
DOOR ID:
638908
Sked_04160,
Sked_04170,
Sked_04180,
Sked_04190
View Structure
5
571230-571293
(-)
ykkC-III
570904-571219 (-)
Sked_05170
Sked_05170
single gene
DOOR ID:
2732096
Sked_05170
View Structure
6
910470-910570
(+)
TPP
910644-911322 (+)
Sked_08000
YKOF-like protein
Sked_08000
Operon
DOOR ID:
638984
Sked_08000,
Sked_08010,
Sked_08020,
Sked_08030
View Structure
7
2021678-2021798
(+)
FMN
2021884-2023066 (+)
Sked_18140
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Sked_18140
Operon
DOOR ID:
639199
Sked_18140,
Sked_18150,
Sked_18160,
Sked_18170
View Structure
8
3116657-3116801
(-)
ZMP-ZTP
3115243-3116536 (-)
Sked_27940
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Sked_27940
Operon
DOOR ID:
639400
Sked_27930,
Sked_27940
View Structure
9
3141505-3141594
(-)
ZMP-ZTP
3139776-3141435 (-)
Sked_28110
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Sked_28110
Single gene
DOOR ID:
2732893
Sked_28110
View Structure
10
3426077-3426269
(-)
ydaO-yuaA
3425244-3426030 (-)
Sked_30760
Cell wall-associated hydrolase; invasion-associated protein
Sked_30760
Single gene
DOOR ID:
2732970
Sked_30760
View Structure
11
3547954-3548002
(-)
SAH
3546027-3547011 (-)
Sked_31860
Phosphate transport system permease protein
Sked_31860
Operon
DOOR ID:
639485
Sked_31840,
Sked_31850,
Sked_31860
View Structure
12
3828570-3828681
(+)
SAM-IV
3828700-3829225 (+)
Sked_34260
Conserved protein of DIM6/NTAB family
Sked_34260
Single gene
DOOR ID:
2733078
Sked_34260
View Structure
13
3836556-3836668
(-)
SAM-IV
3835461-3836412 (-)
Sked_34320
ABC-type dipeptide/oligopeptide/nickel transport system; permease component
Sked_34320
Operon
DOOR ID:
639534
Sked_34290,
Sked_34300,
Sked_34310,
Sked_34320
View Structure
14
3915996-3916109
(-)
SAM-IV
3914499-3915948 (-)
Sked_35010
Selenocysteine lyase
Sked_35010
Single gene
DOOR ID:
2733111
Sked_35010
View Structure
15
3916221-3916323
(+)
SAM
3916329-3916761 (+)
Sked_35020
Rhodanese-related sulfurtransferase
Sked_35020
Operon
DOOR ID:
639546
Sked_35020,
Sked_35030,
Sked_35040
View Structure
Genome:
Sanguibacter keddieii DSM 10542
(
NC_013521.1
);
Phylum:
Actinobacteria
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"46298-46409";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:11:"46592-49595";i:10;s:1:"+";i:11;s:10:"Sked_00470";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:10:"Sked_00470";i:14;s:6:"Operon";i:15;s:6:"638832";i:16;s:32:"Sked_00470;Sked_00490;Sked_00500";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"46488-46533";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:11:"46592-49595";i:10;s:1:"+";i:11;s:10:"Sked_00470";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:10:"Sked_00470";i:14;s:6:"Operon";i:15;s:6:"638832";i:16;s:32:"Sked_00470;Sked_00490;Sked_00500";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"61246-61350";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"60174-61239";i:10;s:1:"-";i:11;s:10:"Sked_00590";i:12;s:39:"Methylenetetrahydrofolate reductase (0)";i:13;s:10:"Sked_00590";i:14;s:6:"Operon";i:15;s:6:"638834";i:16;s:21:"Sked_00580;Sked_00590";i:17;s:143:"cellular amino acid biosynthetic process [GO:0008652]; methionine metabolic process [GO:0006555]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"463812-463916";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"463968-465072";i:10;s:1:"+";i:11;s:10:"Sked_04160";i:12;s:59:"ABC transporter periplasmic binding protein; thiB subfamily";i:13;s:10:"Sked_04160";i:14;s:6:"Operon";i:15;s:6:"638908";i:16;s:43:"Sked_04160;Sked_04170;Sked_04180;Sked_04190";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"571230-571293";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:13:"570904-571219";i:10;s:1:"-";i:11;s:10:"Sked_05170";i:12;s:0:"";i:13;s:10:"Sked_05170";i:14;s:11:"single gene";i:15;s:7:"2732096";i:16;s:10:"Sked_05170";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"910470-910570";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"910644-911322";i:10;s:1:"+";i:11;s:10:"Sked_08000";i:12;s:17:"YKOF-like protein";i:13;s:10:"Sked_08000";i:14;s:6:"Operon";i:15;s:6:"638984";i:16;s:43:"Sked_08000;Sked_08010;Sked_08020;Sked_08030";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2021678-2021798";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2021884-2023066";i:10;s:1:"+";i:11;s:10:"Sked_18140";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:10:"Sked_18140";i:14;s:6:"Operon";i:15;s:6:"639199";i:16;s:43:"Sked_18140;Sked_18150;Sked_18160;Sked_18170";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3116657-3116801";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3115243-3116536";i:10;s:1:"-";i:11;s:10:"Sked_27940";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:10:"Sked_27940";i:14;s:6:"Operon";i:15;s:6:"639400";i:16;s:21:"Sked_27930;Sked_27940";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3141505-3141594";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3139776-3141435";i:10;s:1:"-";i:11;s:10:"Sked_28110";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:10:"Sked_28110";i:14;s:11:"Single gene";i:15;s:7:"2732893";i:16;s:10:"Sked_28110";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3426077-3426269";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3425244-3426030";i:10;s:1:"-";i:11;s:10:"Sked_30760";i:12;s:59:"Cell wall-associated hydrolase; invasion-associated protein";i:13;s:10:"Sked_30760";i:14;s:11:"Single gene";i:15;s:7:"2732970";i:16;s:10:"Sked_30760";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3547954-3548002";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3546027-3547011";i:10;s:1:"-";i:11;s:10:"Sked_31860";i:12;s:43:"Phosphate transport system permease protein";i:13;s:10:"Sked_31860";i:14;s:6:"Operon";i:15;s:6:"639485";i:16;s:32:"Sked_31840;Sked_31850;Sked_31860";i:17;s:36:"phosphate ion transport [GO:0006817]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3828570-3828681";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3828700-3829225";i:10;s:1:"+";i:11;s:10:"Sked_34260";i:12;s:37:"Conserved protein of DIM6/NTAB family";i:13;s:10:"Sked_34260";i:14;s:11:"Single gene";i:15;s:7:"2733078";i:16;s:10:"Sked_34260";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3836556-3836668";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3835461-3836412";i:10;s:1:"-";i:11;s:10:"Sked_34320";i:12;s:75:"ABC-type dipeptide/oligopeptide/nickel transport system; permease component";i:13;s:10:"Sked_34320";i:14;s:6:"Operon";i:15;s:6:"639534";i:16;s:43:"Sked_34290;Sked_34300;Sked_34310;Sked_34320";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3915996-3916109";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3914499-3915948";i:10;s:1:"-";i:11;s:10:"Sked_35010";i:12;s:20:"Selenocysteine lyase";i:13;s:10:"Sked_35010";i:14;s:11:"Single gene";i:15;s:7:"2733111";i:16;s:10:"Sked_35010";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013521.1";i:2;s:32:"Sanguibacter keddieii DSM 10542 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3916221-3916323";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3916329-3916761";i:10;s:1:"+";i:11;s:10:"Sked_35020";i:12;s:35:"Rhodanese-related sulfurtransferase";i:13;s:10:"Sked_35020";i:14;s:6:"Operon";i:15;s:6:"639546";i:16;s:32:"Sked_35020;Sked_35030;Sked_35040";i:17;s:0:"";i:18;s:15:"View Structure ";}}