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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
264925-265114
(+)
cobalamin
265315-266488 (+)
Vpar_0195
Periplasmic binding protein
Vpar_0195
Single gene
DOOR ID:
2731404
Vpar_0195
View Structure
2
382266-382427
(+)
glmS
382550-384383 (+)
Vpar_0299
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Vpar_0299
Operon
DOOR ID:
638521
Vpar_0299,
Vpar_0300,
Vpar_0301
View Structure
3
396335-396440
(-)
TPP
395085-396282 (-)
Vpar_0312
Hydroxymethylpyrimidine transporter CytX
Vpar_0312
Single gene
DOOR ID:
2731460
Vpar_0312
View Structure
4
396522-396616
(+)
TPP
396679-397159 (+)
Vpar_0313
ThiW protein
Vpar_0313
Operon
DOOR ID:
638525
Vpar_0313,
Vpar_0314,
Vpar_0315
View Structure
5
551931-552038
(+)
TPP
552116-553421 (+)
Vpar_0454
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Vpar_0454
Operon
DOOR ID:
638556
Vpar_0454,
Vpar_0455,
Vpar_0456,
Vpar_0457,
Vpar_0458,
Vpar_0459
View Structure
6
986751-986851
(+)
SAM
986900-988091 (+)
Vpar_0845
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Vpar_0845
Operon
DOOR ID:
638626
Vpar_0845,
Vpar_0846,
Vpar_0847,
Vpar_0848,
Vpar_0849,
Vpar_0850,
Vpar_0851,
Vpar_0852,
Vpar_0853,
Vpar_0854,
Vpar_0855
View Structure
7
1069288-1069460
(+)
lysine
1069536-1070334 (+)
Vpar_0928
4-hydroxy-tetrahydrodipicolinate reductase (HTPA reductase)
Vpar_0928
Operon
DOOR ID:
638638
Vpar_0928,
Vpar_0929,
Vpar_0930
View Structure
8
1095566-1095681
(-)
FMN
1094283-1095498 (-)
Vpar_0954
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Vpar_0954
Operon
DOOR ID:
638643
Vpar_0951,
Vpar_0952,
Vpar_0953,
Vpar_0954
View Structure
9
1779192-1779379
(-)
cobalamin
1778108-1779047 (-)
Vpar_1564
Binding-protein-dependent transport systems inner membrane component
Vpar_1564
Operon
DOOR ID:
638767
Vpar_1563,
Vpar_1564
View Structure
10
2019003-2019179
(-)
cobalamin
2016550-2018713 (-)
Vpar_1763
Methylmalonyl-CoA mutase
Vpar_1763
Operon
DOOR ID:
638806
Vpar_1761,
Vpar_1762,
Vpar_1763
View Structure
Genome:
Veillonella parvula DSM 2008
(
NC_013520.1
);
Phylum:
Firmicutes
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carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013520.1";i:2;s:29:"Veillonella parvula DSM 2008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"396335-396440";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"395085-396282";i:10;s:1:"-";i:11;s:9:"Vpar_0312";i:12;s:40:"Hydroxymethylpyrimidine transporter CytX";i:13;s:9:"Vpar_0312";i:14;s:11:"Single gene";i:15;s:7:"2731460";i:16;s:9:"Vpar_0312";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013520.1";i:2;s:29:"Veillonella parvula DSM 2008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"396522-396616";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"396679-397159";i:10;s:1:"+";i:11;s:9:"Vpar_0313";i:12;s:12:"ThiW protein";i:13;s:9:"Vpar_0313";i:14;s:6:"Operon";i:15;s:6:"638525";i:16;s:29:"Vpar_0313;Vpar_0314;Vpar_0315";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013520.1";i:2;s:29:"Veillonella parvula DSM 2008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"551931-552038";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"552116-553421";i:10;s:1:"+";i:11;s:9:"Vpar_0454";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Vpar_0454";i:14;s:6:"Operon";i:15;s:6:"638556";i:16;s:59:"Vpar_0454;Vpar_0455;Vpar_0456;Vpar_0457;Vpar_0458;Vpar_0459";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013520.1";i:2;s:29:"Veillonella parvula DSM 2008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"986751-986851";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"986900-988091";i:10;s:1:"+";i:11;s:9:"Vpar_0845";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:9:"Vpar_0845";i:14;s:6:"Operon";i:15;s:6:"638626";i:16;s:109:"Vpar_0845;Vpar_0846;Vpar_0847;Vpar_0848;Vpar_0849;Vpar_0850;Vpar_0851;Vpar_0852;Vpar_0853;Vpar_0854;Vpar_0855";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013520.1";i:2;s:29:"Veillonella parvula DSM 2008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1069288-1069460";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1069536-1070334";i:10;s:1:"+";i:11;s:9:"Vpar_0928";i:12;s:60:"4-hydroxy-tetrahydrodipicolinate reductase (HTPA reductase) ";i:13;s:9:"Vpar_0928";i:14;s:6:"Operon";i:15;s:6:"638638";i:16;s:29:"Vpar_0928;Vpar_0929;Vpar_0930";i:17;s:111:"diaminopimelate biosynthetic process [GO:0019877]; lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013520.1";i:2;s:29:"Veillonella parvula DSM 2008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1095566-1095681";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1094283-1095498";i:10;s:1:"-";i:11;s:9:"Vpar_0954";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Vpar_0954";i:14;s:6:"Operon";i:15;s:6:"638643";i:16;s:39:"Vpar_0951;Vpar_0952;Vpar_0953;Vpar_0954";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013520.1";i:2;s:29:"Veillonella parvula DSM 2008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1779192-1779379";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1778108-1779047";i:10;s:1:"-";i:11;s:9:"Vpar_1564";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:9:"Vpar_1564";i:14;s:6:"Operon";i:15;s:6:"638767";i:16;s:19:"Vpar_1563;Vpar_1564";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013520.1";i:2;s:29:"Veillonella parvula DSM 2008 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2019003-2019179";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2016550-2018713";i:10;s:1:"-";i:11;s:9:"Vpar_1763";i:12;s:24:"Methylmalonyl-CoA mutase";i:13;s:9:"Vpar_1763";i:14;s:6:"Operon";i:15;s:6:"638806";i:16;s:29:"Vpar_1761;Vpar_1762;Vpar_1763";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}}