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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
594325-594403
(-)
fluoride
592965-594219 (-)
Sterm_0545
Chloride channel core
Sterm_0545
Single gene
DOOR ID:
2730281
Sterm_0545
View Structure
2
759665-759825
(+)
ykoK
760087-762724 (+)
Sterm_0707
Magnesium-translocating P-type ATPase
Sterm_0707
Single gene
DOOR ID:
2730342
Sterm_0707
View Structure
3
1089505-1089679
(+)
cobalamin
1089921-1090290 (+)
Sterm_1002
Cobalamin (Vitamin B12) biosynthesis CbiX protein
Sterm_1002
Single gene
DOOR ID:
2730421
Sterm_1002
View Structure
4
1257924-1258023
(+)
TPP
1258268-1259087 (+)
Sterm_1153
Phosphomethylpyrimidine kinase
Sterm_1153
Operon
DOOR ID:
637861
Sterm_1153,
Sterm_1154,
Sterm_1155,
Sterm_1156
View Structure
5
1258085-1258183
(+)
TPP
1258268-1259087 (+)
Sterm_1153
Phosphomethylpyrimidine kinase
Sterm_1153
Operon
DOOR ID:
637861
Sterm_1153,
Sterm_1154,
Sterm_1155,
Sterm_1156
View Structure
6
1443670-1443788
(+)
MOCO
1444192-1444345 (+)
Sterm_1359
Sterm_1359
Single gene
DOOR ID:
2730517
Sterm_1359
View Structure
7
1646398-1646638
(-)
glmS
1644532-1646362 (-)
Sterm_1546
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Sterm_1546
Single gene
DOOR ID:
2730572
Sterm_1546
View Structure
8
1660762-1660859
(-)
purine
1659148-1660687 (-)
Sterm_1557
GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
Sterm_1557
Single gene
DOOR ID:
2730581
Sterm_1557
View Structure
9
1681184-1681281
(+)
ykkC-yxkD
1681348-1682686 (+)
Sterm_1583
MATE efflux family protein
Sterm_1583
Single gene
DOOR ID:
2730593
Sterm_1583
View Structure
10
1846920-1847007
(+)
SAM
1847157-1848312 (+)
Sterm_1727
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Sterm_1727
Single gene
DOOR ID:
2730627
Sterm_1727
View Structure
11
2190175-2190261
(+)
TPP
2190315-2190603 (+)
Sterm_2063
Sterm_2063
Operon
DOOR ID:
638026
Sterm_2063,
Sterm_2064,
Sterm_2065,
Sterm_2066,
Sterm_2067
View Structure
12
2231621-2231718
(+)
purine
2231778-2231886 (+)
Sterm_2104
Sterm_2104
Operon
DOOR ID:
638036
Sterm_2104,
Sterm_2105
View Structure
13
2233593-2233690
(+)
purine
2233789-2237524 (+)
Sterm_2106
Phosphoribosylformylglycinamidine synthase
Sterm_2106
Operon
DOOR ID:
638037
Sterm_2106,
Sterm_2107,
Sterm_2108,
Sterm_2109,
Sterm_2110,
Sterm_2111,
Sterm_2112,
Sterm_2113
View Structure
14
2437268-2437431
(-)
lysine
2436366-2437206 (-)
Sterm_2305
Extracellular solute-binding protein family 3
Sterm_2305
Operon
DOOR ID:
638083
Sterm_2303,
Sterm_2304,
Sterm_2305
View Structure
15
2488052-2488211
(+)
glmS
2488245-2490354 (+)
Sterm_2341
Glutamine synthetase catalytic region
Sterm_2341
Single gene
DOOR ID:
2730795
Sterm_2341
View Structure
16
2726594-2726752
(+)
ykoK
2727068-2727761 (+)
Sterm_2567
MgtC/SapB transporter
Sterm_2567
Operon
DOOR ID:
638128
Sterm_2567,
Sterm_2568
View Structure
17
2726824-2726983
(+)
ykoK
2727068-2727761 (+)
Sterm_2567
MgtC/SapB transporter
Sterm_2567
Operon
DOOR ID:
638128
Sterm_2567,
Sterm_2568
View Structure
18
2907232-2907329
(-)
purine
2905875-2907165 (-)
Sterm_2728
Xanthine/uracil/vitamin C permease
Sterm_2728
Single gene
DOOR ID:
2730914
Sterm_2728
View Structure
19
2970348-2970466
(-)
FMN
2969682-2970150 (-)
Sterm_2781
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Sterm_2781
Operon
DOOR ID:
638167
Sterm_2778,
Sterm_2779,
Sterm_2780,
Sterm_2781
View Structure
20
3136430-3136609
(-)
lysine
3135033-3136341 (-)
Sterm_2991
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
Sterm_2991
Operon
DOOR ID:
638202
Sterm_2986,
Sterm_2987,
Sterm_2988,
Sterm_2989,
Sterm_2990,
Sterm_2991
View Structure
21
3350323-3350399
(-)
fluoride
3349095-3350271 (-)
Sterm_3197
Sodium/hydrogen exchanger
Sterm_3197
Single gene
DOOR ID:
2731024
Sterm_3197
View Structure
22
3489274-3489398
(+)
FMN
3489456-3490401 (+)
Sterm_3316
Sterm_3316
Single gene
DOOR ID:
2731058
Sterm_3316
View Structure
Genome:
Sebaldella termitidis ATCC 33386
(
NC_013517.1
);
Phylum:
Fusobacteriia
a:23:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:13:"594325-594403";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"592965-594219";i:10;s:1:"-";i:11;s:10:"Sterm_0545";i:12;s:21:"Chloride channel core";i:13;s:10:"Sterm_0545";i:14;s:11:"Single gene";i:15;s:7:"2730281";i:16;s:10:"Sterm_0545";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:13:"759665-759825";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"760087-762724";i:10;s:1:"+";i:11;s:10:"Sterm_0707";i:12;s:37:"Magnesium-translocating P-type ATPase";i:13;s:10:"Sterm_0707";i:14;s:11:"Single gene";i:15;s:7:"2730342";i:16;s:10:"Sterm_0707";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1089505-1089679";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1089921-1090290";i:10;s:1:"+";i:11;s:10:"Sterm_1002";i:12;s:49:"Cobalamin (Vitamin B12) biosynthesis CbiX protein";i:13;s:10:"Sterm_1002";i:14;s:11:"Single gene";i:15;s:7:"2730421";i:16;s:10:"Sterm_1002";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1257924-1258023";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:15:"1258268-1259087";i:10;s:1:"+";i:11;s:10:"Sterm_1153";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:10:"Sterm_1153";i:14;s:6:"Operon";i:15;s:6:"637861";i:16;s:43:"Sterm_1153;Sterm_1154;Sterm_1155;Sterm_1156";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1258085-1258183";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:6:"Tandem";i:9;s:15:"1258268-1259087";i:10;s:1:"+";i:11;s:10:"Sterm_1153";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:10:"Sterm_1153";i:14;s:6:"Operon";i:15;s:6:"637861";i:16;s:43:"Sterm_1153;Sterm_1154;Sterm_1155;Sterm_1156";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1443670-1443788";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1444192-1444345";i:10;s:1:"+";i:11;s:10:"Sterm_1359";i:12;s:0:"";i:13;s:10:"Sterm_1359";i:14;s:11:"Single gene";i:15;s:7:"2730517";i:16;s:10:"Sterm_1359";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1646398-1646638";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"1644532-1646362";i:10;s:1:"-";i:11;s:10:"Sterm_1546";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:10:"Sterm_1546";i:14;s:11:"Single gene";i:15;s:7:"2730572";i:16;s:10:"Sterm_1546";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1660762-1660859";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1659148-1660687";i:10;s:1:"-";i:11;s:10:"Sterm_1557";i:12;s:83:"GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)";i:13;s:10:"Sterm_1557";i:14;s:11:"Single gene";i:15;s:7:"2730581";i:16;s:10:"Sterm_1557";i:17;s:79:"glutamine metabolic process [GO:0006541]; GMP biosynthetic process [GO:0006177]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1681184-1681281";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"1681348-1682686";i:10;s:1:"+";i:11;s:10:"Sterm_1583";i:12;s:26:"MATE efflux family protein";i:13;s:10:"Sterm_1583";i:14;s:11:"Single gene";i:15;s:7:"2730593";i:16;s:10:"Sterm_1583";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"1846920-1847007";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1847157-1848312";i:10;s:1:"+";i:11;s:10:"Sterm_1727";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:10:"Sterm_1727";i:14;s:11:"Single gene";i:15;s:7:"2730627";i:16;s:10:"Sterm_1727";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"2190175-2190261";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2190315-2190603";i:10;s:1:"+";i:11;s:10:"Sterm_2063";i:12;s:0:"";i:13;s:10:"Sterm_2063";i:14;s:6:"Operon";i:15;s:6:"638026";i:16;s:54:"Sterm_2063;Sterm_2064;Sterm_2065;Sterm_2066;Sterm_2067";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"2231621-2231718";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2231778-2231886";i:10;s:1:"+";i:11;s:10:"Sterm_2104";i:12;s:0:"";i:13;s:10:"Sterm_2104";i:14;s:6:"Operon";i:15;s:6:"638036";i:16;s:21:"Sterm_2104;Sterm_2105";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"2233593-2233690";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2233789-2237524";i:10;s:1:"+";i:11;s:10:"Sterm_2106";i:12;s:43:"Phosphoribosylformylglycinamidine synthase ";i:13;s:10:"Sterm_2106";i:14;s:6:"Operon";i:15;s:6:"638037";i:16;s:87:"Sterm_2106;Sterm_2107;Sterm_2108;Sterm_2109;Sterm_2110;Sterm_2111;Sterm_2112;Sterm_2113";i:17;s:40:"glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"2437268-2437431";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2436366-2437206";i:10;s:1:"-";i:11;s:10:"Sterm_2305";i:12;s:45:"Extracellular solute-binding protein family 3";i:13;s:10:"Sterm_2305";i:14;s:6:"Operon";i:15;s:6:"638083";i:16;s:32:"Sterm_2303;Sterm_2304;Sterm_2305";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"2488052-2488211";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2488245-2490354";i:10;s:1:"+";i:11;s:10:"Sterm_2341";i:12;s:37:"Glutamine synthetase catalytic region";i:13;s:10:"Sterm_2341";i:14;s:11:"Single gene";i:15;s:7:"2730795";i:16;s:10:"Sterm_2341";i:17;s:48:"nitrogen compound metabolic process [GO:0006807]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 ";i:3;s:13:"Fusobacteriia";i:4;s:6:"203490";i:5;s:15:"2726594-2726752";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:6:"Tandem";i:9;s:15:"2727068-2727761";i:10;s:1:"+";i:11;s:10:"Sterm_2567";i:12;s:21:"MgtC/SapB transporter";i:13;s:10:"Sterm_2567";i:14;s:6:"Operon";i:15;s:6:"638128";i:16;s:21:"Sterm_2567;Sterm_2568";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_013517.1";i:2;s:33:"Sebaldella termitidis ATCC 33386 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