RiboswitchDB

Genome: Sulfurospirillum deleyianum DSM 6946 (NC_013512.1); Phylum: delta/epsilon subdivisions

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

270196-270351 (+)

FMN

270437-271082 (+)

Sdel_0283

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)

Single gene

DOOR ID: 2729528

Sdel_0283

2

532004-532126 (-)

TPP

529692-530001 (+)

Sdel_0549

Operon

DOOR ID: 637014

Sdel_0547,
Sdel_0548,
Sdel_0549

3

836010-836074 (+)

glutamine

836571-837141 (-)

Sdel_0836

Protein-glutamate methylesterase (1)

Operon

DOOR ID: 637074

Sdel_0834,
Sdel_0835,
Sdel_0836,
Sdel_0837,
Sdel_0838,
Sdel_0839,
Sdel_0840

a:4:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013512.1";i:2;s:37:"Sulfurospirillum deleyianum DSM 6946 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"270196-270351";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"270437-271082";i:10;s:1:"+";i:11;s:9:"Sdel_0283";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"Sdel_0283";i:14;s:11:"Single gene";i:15;s:7:"2729528";i:16;s:9:"Sdel_0283";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013512.1";i:2;s:37:"Sulfurospirillum deleyianum DSM 6946 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"532004-532126";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"529692-530001";i:10;s:1:"+";i:11;s:9:"Sdel_0549";i:12;s:0:"";i:13;s:9:"Sdel_0549";i:14;s:6:"Operon";i:15;s:6:"637014";i:16;s:29:"Sdel_0547;Sdel_0548;Sdel_0549";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013512.1";i:2;s:37:"Sulfurospirillum deleyianum DSM 6946 ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"836010-836074";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:13:"836571-837141";i:10;s:1:"-";i:11;s:9:"Sdel_0836";i:12;s:36:"Protein-glutamate methylesterase (1)";i:13;s:9:"Sdel_0836";i:14;s:6:"Operon";i:15;s:6:"637074";i:16;s:69:"Sdel_0834;Sdel_0835;Sdel_0836;Sdel_0837;Sdel_0838;Sdel_0839;Sdel_0840";i:17;s:23:"chemotaxis [GO:0006935]";i:18;s:15:"View Structure
";}}