About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
16608-16710
(+)
yybP-ykoY
16823-17348 (+)
ETAE_0016
Putative membrane protein
ETAE_0016
Single gene
DOOR ID:
2725623
ETAE_0016
View Structure
2
196444-196559
(-)
TPP
194401-196333 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ETAE_0178
Operon
DOOR ID:
635146
ETAE_0177
(thiE)
,
ETAE_0178
(thiC)
View Structure
3
377483-377527
(+)
mini-ykkC
377562-377865 (+)
sugE
ETAE_0334
Single gene
DOOR ID:
2725763
ETAE_0334
(sugE)
View Structure
4
475003-475150
(-)
fluoride
474510-474900 (-)
crcB
Putative fluoride ion transporter CrcB
ETAE_0432
Single gene
DOOR ID:
2725803
ETAE_0432
(crcB)
View Structure
5
519428-519584
(+)
FMN
520423-521191 (-)
ETAE_0473
Putative divalent heavy-metal cations transporter
ETAE_0473
Single gene
DOOR ID:
2725829
ETAE_0473
View Structure
6
673903-674002
(-)
TPP
672866-673862 (-)
tbpA
Thiamin transporter substrate binding subunit
ETAE_0610
Operon
DOOR ID:
635247
ETAE_0608
(thiQ)
,
ETAE_0609
(thiP)
,
ETAE_0610
(tbpA)
View Structure
7
1150915-1151011
(+)
TPP
1151045-1151849 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ETAE_1058
Operon
DOOR ID:
635332
ETAE_1058
(thiM)
,
ETAE_1059
(thiD)
View Structure
8
1958847-1959027
(-)
cobalamin
1957117-1958659 (-)
cbiP1
Cobyric acid synthase
ETAE_1848
Operon
DOOR ID:
635467
ETAE_1847
(cobT)
,
ETAE_1848
(cbiP1)
View Structure
9
2114897-2115072
(-)
cobalamin
2113420-2114800 (-)
cbiA
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
ETAE_2004
Operon
DOOR ID:
635487
ETAE_1988
(cobU)
,
ETAE_1989
(cbiP2)
,
ETAE_1990
(cbiQ)
,
ETAE_1991
(cbiN)
,
ETAE_1992
(cbiM)
,
ETAE_1993
(cbiL)
,
ETAE_1994
(cbiK)
,
ETAE_1995
(cbiJ)
,
ETAE_1996
(cbiH)
,
ETAE_1997
(cbiG)
,
ETAE_1998
(cbiF)
,
ETAE_1999
(cbiT)
,
ETAE_2000
(cbiE)
,
ETAE_2001
(cbiD)
,
ETAE_2002
(cbiC)
,
ETAE_2003
(cbiB)
,
ETAE_2004
(cbiA)
View Structure
10
2442139-2442214
(-)
fluoride
2441158-2442049 (-)
ETAE_2323
Manganese-dependent inorganic pyrophosphatase
ETAE_2323
Operon
DOOR ID:
635553
ETAE_2321,
ETAE_2322
(uspA2)
,
ETAE_2323
View Structure
11
2471537-2471679
(-)
MOCO
2470036-2470522 (-)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
ETAE_2346
Operon
DOOR ID:
635557
ETAE_2344
(moaE)
,
ETAE_2345
(moaD)
,
ETAE_2346
(moaC)
,
ETAE_2347
(moaA)
View Structure
Genome:
Edwardsiella tarda EIB202
(
NC_013508.1
);
Phylum:
Gammaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013508.1";i:2;s:26:"Edwardsiella tarda EIB202 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"16608-16710";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:11:"16823-17348";i:10;s:1:"+";i:11;s:9:"ETAE_0016";i:12;s:25:"Putative membrane protein";i:13;s:9:"ETAE_0016";i:14;s:11:"Single gene";i:15;s:7:"2725623";i:16;s:9:"ETAE_0016";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013508.1";i:2;s:26:"Edwardsiella tarda EIB202 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"196444-196559";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"194401-196333";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"ETAE_0178";i:14;s:6:"Operon";i:15;s:6:"635146";i:16;s:31:"ETAE_0177(thiE);ETAE_0178(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013508.1";i:2;s:26:"Edwardsiella tarda EIB202 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"377483-377527";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"377562-377865";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:9:"ETAE_0334";i:14;s:11:"Single gene";i:15;s:7:"2725763";i:16;s:15:"ETAE_0334(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013508.1";i:2;s:26:"Edwardsiella tarda EIB202 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"475003-475150";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"474510-474900";i:10;s:1:"-";i:11;s:4:"crcB";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"ETAE_0432";i:14;s:11:"Single gene";i:15;s:7:"2725803";i:16;s:15:"ETAE_0432(crcB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013508.1";i:2;s:26:"Edwardsiella tarda EIB202 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"519428-519584";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"520423-521191";i:10;s:1:"-";i:11;s:9:"ETAE_0473";i:12;s:49:"Putative divalent heavy-metal cations transporter";i:13;s:9:"ETAE_0473";i:14;s:11:"Single gene";i:15;s:7:"2725829";i:16;s:9:"ETAE_0473";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013508.1";i:2;s:26:"Edwardsiella tarda EIB202 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"673903-674002";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"672866-673862";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:45:"Thiamin transporter substrate binding subunit";i:13;s:9:"ETAE_0610";i:14;s:6:"Operon";i:15;s:6:"635247";i:16;s:47:"ETAE_0608(thiQ);ETAE_0609(thiP);ETAE_0610(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013508.1";i:2;s:26:"Edwardsiella tarda EIB202 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1150915-1151011";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1151045-1151849";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"ETAE_1058";i:14;s:6:"Operon";i:15;s:6:"635332";i:16;s:31:"ETAE_1058(thiM);ETAE_1059(thiD)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013508.1";i:2;s:26:"Edwardsiella tarda EIB202 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1958847-1959027";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1957117-1958659";i:10;s:1:"-";i:11;s:5:"cbiP1";i:12;s:21:"Cobyric acid synthase";i:13;s:9:"ETAE_1848";i:14;s:6:"Operon";i:15;s:6:"635467";i:16;s:32:"ETAE_1847(cobT);ETAE_1848(cbiP1)";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013508.1";i:2;s:26:"Edwardsiella tarda EIB202 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2114897-2115072";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2113420-2114800";i:10;s:1:"-";i:11;s:4:"cbiA";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:9:"ETAE_2004";i:14;s:6:"Operon";i:15;s:6:"635487";i:16;s:272:"ETAE_1988(cobU);ETAE_1989(cbiP2);ETAE_1990(cbiQ);ETAE_1991(cbiN);ETAE_1992(cbiM);ETAE_1993(cbiL);ETAE_1994(cbiK);ETAE_1995(cbiJ);ETAE_1996(cbiH);ETAE_1997(cbiG);ETAE_1998(cbiF);ETAE_1999(cbiT);ETAE_2000(cbiE);ETAE_2001(cbiD);ETAE_2002(cbiC);ETAE_2003(cbiB);ETAE_2004(cbiA)";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013508.1";i:2;s:26:"Edwardsiella tarda EIB202 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2442139-2442214";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2441158-2442049";i:10;s:1:"-";i:11;s:9:"ETAE_2323";i:12;s:45:"Manganese-dependent inorganic pyrophosphatase";i:13;s:9:"ETAE_2323";i:14;s:6:"Operon";i:15;s:6:"635553";i:16;s:36:"ETAE_2321;ETAE_2322(uspA2);ETAE_2323";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013508.1";i:2;s:26:"Edwardsiella tarda EIB202 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2471537-2471679";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2470036-2470522";i:10;s:1:"-";i:11;s:4:"moaC";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:9:"ETAE_2346";i:14;s:6:"Operon";i:15;s:6:"635557";i:16;s:63:"ETAE_2344(moaE);ETAE_2345(moaD);ETAE_2346(moaC);ETAE_2347(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}}