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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
78002-78092
(-)
TPP
77386-77950 (-)
FI9785_131
FI9785_131
Operon
DOOR ID:
634774
FI9785_129,
FI9785_130,
FI9785_131
View Structure
2
90997-91170
(-)
lysine
89268-90882 (-)
FI9785_147
ABC transporter permease component
FI9785_147
Operon
DOOR ID:
634778
FI9785_146,
FI9785_147
View Structure
3
222710-222882
(+)
ykoK
222960-223983 (+)
FI9785_277
Putative cation transport ATPase
FI9785_277
Operon
DOOR ID:
634809
FI9785_277,
FI9785_278
(metS)
,
FI9785_279,
FI9785_280,
FI9785_281
(ksgA)
View Structure
4
253831-253929
(-)
purine
253181-253760 (-)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
FI9785_302
Operon
DOOR ID:
634815
FI9785_301
(pbuX)
,
FI9785_302
(xpt)
View Structure
5
461088-461158
(+)
SMK_box
462353-463811 (+)
FI9785_520
Major facilitator superfamily permease
FI9785_520
Operon
DOOR ID:
634854
FI9785_519
(metK)
,
FI9785_520
View Structure
6
965039-965206
(-)
ykoK
964625-964961 (-)
FI9785_1043
FI9785_1043
Single gene
DOOR ID:
2725355
FI9785_1043
View Structure
7
984651-984832
(-)
lysine
983255-984560 (-)
lysA
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
FI9785_1064
Operon
DOOR ID:
634962
FI9785_1058
(asd)
,
FI9785_1059
(araT)
,
FI9785_1060
(dapB)
,
FI9785_1061
(dapA)
,
FI9785_1062
(hipO)
,
FI9785_1063
(dapD)
,
FI9785_1064
(lysA)
View Structure
8
1057483-1057594
(-)
FMN
1056815-1057409 (-)
FI9785_1121
Riboflavin transporter
FI9785_1121
Single gene
DOOR ID:
2725393
FI9785_1121
View Structure
9
1234976-1235038
(-)
fluoride
1234072-1234888 (-)
FI9785_1313
HAD superfamily hydrolase
FI9785_1313
Operon
DOOR ID:
635005
FI9785_1311
(crcB)
,
FI9785_1312
(crcB2)
,
FI9785_1313
View Structure
10
1728685-1728782
(+)
purine
1728863-1730177 (+)
FI9785_1787
FI9785_1787
Single gene
DOOR ID:
2725597
FI9785_1787
View Structure
Genome:
Lactobacillus johnsonii FI9785
(
NC_013504.1
);
Phylum:
Firmicutes
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xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013504.1";i:2;s:31:"Lactobacillus johnsonii FI9785 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"461088-461158";i:6;s:1:"+";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:13:"462353-463811";i:10;s:1:"+";i:11;s:10:"FI9785_520";i:12;s:38:"Major facilitator superfamily permease";i:13;s:10:"FI9785_520";i:14;s:6:"Operon";i:15;s:6:"634854";i:16;s:27:"FI9785_519(metK);FI9785_520";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013504.1";i:2;s:31:"Lactobacillus johnsonii FI9785 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"965039-965206";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"964625-964961";i:10;s:1:"-";i:11;s:11:"FI9785_1043";i:12;s:0:"";i:13;s:11:"FI9785_1043";i:14;s:11:"Single gene";i:15;s:7:"2725355";i:16;s:11:"FI9785_1043";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013504.1";i:2;s:31:"Lactobacillus johnsonii FI9785 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"984651-984832";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"983255-984560";i:10;s:1:"-";i:11;s:4:"lysA";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:11:"FI9785_1064";i:14;s:6:"Operon";i:15;s:6:"634962";i:16;s:124:"FI9785_1058(asd);FI9785_1059(araT);FI9785_1060(dapB);FI9785_1061(dapA);FI9785_1062(hipO);FI9785_1063(dapD);FI9785_1064(lysA)";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013504.1";i:2;s:31:"Lactobacillus johnsonii FI9785 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1057483-1057594";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1056815-1057409";i:10;s:1:"-";i:11;s:11:"FI9785_1121";i:12;s:22:"Riboflavin transporter";i:13;s:11:"FI9785_1121";i:14;s:11:"Single gene";i:15;s:7:"2725393";i:16;s:11:"FI9785_1121";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013504.1";i:2;s:31:"Lactobacillus johnsonii FI9785 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1234976-1235038";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1234072-1234888";i:10;s:1:"-";i:11;s:11:"FI9785_1313";i:12;s:25:"HAD superfamily hydrolase";i:13;s:11:"FI9785_1313";i:14;s:6:"Operon";i:15;s:6:"635005";i:16;s:48:"FI9785_1311(crcB);FI9785_1312(crcB2);FI9785_1313";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013504.1";i:2;s:31:"Lactobacillus johnsonii FI9785 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1728685-1728782";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1728863-1730177";i:10;s:1:"+";i:11;s:11:"FI9785_1787";i:12;s:0:"";i:13;s:11:"FI9785_1787";i:14;s:11:"Single gene";i:15;s:7:"2725597";i:16;s:11:"FI9785_1787";i:17;s:0:"";i:18;s:15:"View Structure ";}}
