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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
86441-86546
(-)
TPP
84473-86357 (-)
Rmar_0078
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Rmar_0078
Single gene
DOOR ID:
2724167
Rmar_0078
View Structure
2
475970-476093
(-)
cobalamin
472994-475775 (-)
Rmar_0431
Vitamin B12-dependent ribonucleotide reductase
Rmar_0431
Operon
DOOR ID:
634239
Rmar_0430,
Rmar_0431
View Structure
3
1056592-1056718
(+)
SAM
1056885-1058214 (+)
Rmar_0929
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Rmar_0929
Operon
DOOR ID:
634341
Rmar_0929,
Rmar_0930,
Rmar_0931,
Rmar_0932,
Rmar_0933
View Structure
4
1931417-1931541
(+)
SAM
1931701-1932862 (+)
Rmar_1667
Cystathionine gamma-synthase (8)
Rmar_1667
Single gene
DOOR ID:
2724645
Rmar_1667
View Structure
5
3102998-3103252
(-)
cobalamin
3100967-3102971 (-)
Rmar_2675
TonB-dependent receptor
Rmar_2675
Operon
DOOR ID:
634717
Rmar_2673,
Rmar_2674,
Rmar_2675
View Structure
Genome:
Rhodothermus marinus DSM 4252
(
NC_013501.1
);
Phylum:
Bacteroidetes/Chlorobi group
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