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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15956-16054
(+)
SAM
16113-17082 (+)
SAAV_0014
SAAV_0014
Single gene
DOOR ID:
2720681
SAAV_0014
View Structure
2
391919-392021
(+)
purine
392251-392830 (+)
xpt
SAAV_0355
Operon
DOOR ID:
633349
SAAV_0355
(xpt)
,
SAAV_0356
(pbuX)
,
SAAV_0357
(guaB)
,
SAAV_0358
(guaA)
View Structure
3
720627-720673
(-)
PreQ1
719788-720457 (-)
SAAV_0674
SAAV_0674
Operon
DOOR ID:
633413
SAAV_0672,
SAAV_0673,
SAAV_0674
View Structure
4
827823-827926
(+)
SAM
828014-829040 (+)
SAAV_0784
SAAV_0784
Operon
DOOR ID:
633434
SAAV_0784,
SAAV_0785,
SAAV_0786
View Structure
5
928101-928191
(+)
preQ1-II
929196-929574 (+)
SAAV_0916
SAAV_0916
Single gene
DOOR ID:
2721036
SAAV_0916
View Structure
6
1007089-1007195
(+)
yybP-ykoY
1007270-1008074 (+)
SAAV_0984
SAAV_0984
Single gene
DOOR ID:
2721058
SAAV_0984
View Structure
7
1067162-1067262
(-)
TPP
1066509-1067085 (-)
SAAV_1042
SAAV_1042
Operon
DOOR ID:
633488
SAAV_1040,
SAAV_1041,
SAAV_1042
View Structure
8
1412252-1412427
(+)
lysine
1412508-1413714 (+)
lysC
SAAV_1376
Operon
DOOR ID:
633549
SAAV_1376
(lysC)
,
SAAV_1377
(asd)
,
SAAV_1378
(dapA)
,
SAAV_1379
(dapB)
,
SAAV_1380
(dapD)
View Structure
9
1538046-1538180
(-)
FMN
1537438-1537984 (-)
SAAV_1472
SAAV_1472
Single gene
DOOR ID:
2721249
SAAV_1472
View Structure
10
1591114-1591211
(-)
glycine
1589947-1591039 (-)
gcvT
SAAV_1529
Operon
DOOR ID:
633586
SAAV_1527,
SAAV_1528,
SAAV_1529
(gcvT)
View Structure
11
1722788-1722963
(-)
lysine
1721149-1722643 (-)
SAAV_1670
SAAV_1670
Single gene
DOOR ID:
2721295
SAAV_1670
View Structure
12
1851048-1851183
(-)
FMN
1849877-1850909 (-)
ribD
SAAV_1780
Operon
DOOR ID:
633635
SAAV_1777
(ribH)
,
SAAV_1778
(ribBA)
,
SAAV_1779
(ribE)
,
SAAV_1780
(ribD)
View Structure
13
1867121-1867232
(-)
SAM
1865818-1867015 (-)
metK
SAAV_1799
Single gene
DOOR ID:
2721355
SAAV_1799
(metK)
View Structure
14
2172888-2172990
(-)
TPP
2172118-2172808 (-)
SAAV_2148
SAAV_2148
Operon
DOOR ID:
633704
SAAV_2145
(thiE)
,
SAAV_2146
(thiM)
,
SAAV_2147
(thiD2)
,
SAAV_2148
View Structure
15
2228215-2228431
(-)
glmS
2226207-2228013 (-)
glmS
SAAV_2208
Single gene
DOOR ID:
2721490
SAAV_2208
(glmS)
View Structure
16
2397680-2397775
(-)
SAM
2396289-2397603 (-)
SAAV_2388
SAAV_2388
Single gene
DOOR ID:
2721561
SAAV_2388
View Structure
Genome:
Staphylococcus aureus subsp. aureus ED98
(
NC_013450.1
);
Phylum:
Firmicutes
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ED98";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2172888-2172990";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2172118-2172808";i:10;s:1:"-";i:11;s:9:"SAAV_2148";i:12;s:0:"";i:13;s:9:"SAAV_2148";i:14;s:6:"Operon";i:15;s:6:"633704";i:16;s:58:"SAAV_2145(thiE);SAAV_2146(thiM);SAAV_2147(thiD2);SAAV_2148";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013450.1";i:2;s:40:"Staphylococcus aureus subsp. aureus ED98";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2228215-2228431";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2226207-2228013";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:9:"SAAV_2208";i:14;s:11:"Single gene";i:15;s:7:"2721490";i:16;s:15:"SAAV_2208(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_013450.1";i:2;s:40:"Staphylococcus aureus subsp. aureus ED98";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2397680-2397775";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2396289-2397603";i:10;s:1:"-";i:11;s:9:"SAAV_2388";i:12;s:0:"";i:13;s:9:"SAAV_2388";i:14;s:11:"Single gene";i:15;s:7:"2721561";i:16;s:9:"SAAV_2388";i:17;s:0:"";i:18;s:15:"View Structure ";}}