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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
140996-141105
(+)
SAH
141177-143901 (+)
CtCNB1_0126
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
CtCNB1_0126
Single gene
DOOR ID:
2718549
CtCNB1_0126
View Structure
2
597104-597201
(+)
SAH
597276-598707 (+)
CtCNB1_0535
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
CtCNB1_0535
Single gene
DOOR ID:
2718710
CtCNB1_0535
View Structure
3
1075144-1075243
(-)
glycine
1073703-1074972 (-)
CtCNB1_0952
FAD dependent oxidoreductase
CtCNB1_0952
Operon
DOOR ID:
632551
CtCNB1_0951,
CtCNB1_0952
View Structure
4
2085093-2085335
(+)
cobalamin
2085576-2087280 (+)
CtCNB1_1842
TonB-dependent receptor
CtCNB1_1842
Operon
DOOR ID:
632727
CtCNB1_1842,
CtCNB1_1843
View Structure
5
2121094-2121334
(-)
cobalamin
2119624-2120965 (-)
CtCNB1_1878
Nitrite/sulfite reductase; hemoprotein
CtCNB1_1878
Operon
DOOR ID:
632734
CtCNB1_1875,
CtCNB1_1876,
CtCNB1_1877,
CtCNB1_1878
View Structure
6
2134574-2134817
(-)
cobalamin
2132285-2134451 (-)
CtCNB1_1887
TonB-dependent siderophore receptor
CtCNB1_1887
Operon
DOOR ID:
632736
CtCNB1_1882,
CtCNB1_1883,
CtCNB1_1884,
CtCNB1_1885,
CtCNB1_1886,
CtCNB1_1887
View Structure
7
2340358-2340449
(+)
TPP
2340519-2341614 (+)
CtCNB1_2063
Putative acyl protein synthase/acyl-CoA
CtCNB1_2063
Single gene
DOOR ID:
2719354
CtCNB1_2063
View Structure
8
2478840-2478965
(-)
glycine
2477638-2478775 (-)
CtCNB1_2173
Glycine cleavage system T protein
CtCNB1_2173
Operon
DOOR ID:
632796
CtCNB1_2171,
CtCNB1_2172,
CtCNB1_2173
View Structure
9
2478985-2479095
(-)
glycine
2477638-2478775 (-)
CtCNB1_2173
Glycine cleavage system T protein
CtCNB1_2173
Operon
DOOR ID:
632796
CtCNB1_2171,
CtCNB1_2172,
CtCNB1_2173
View Structure
10
2841218-2841381
(+)
yybP-ykoY
2841447-2841957 (+)
CtCNB1_2477
Putative manganese efflux pump MntP
CtCNB1_2477
Single gene
DOOR ID:
2719556
CtCNB1_2477
View Structure
11
3376588-3376721
(+)
TPP
3376799-3378092 (+)
CtCNB1_2972
Cytosine/purines/uracil permease
CtCNB1_2972
Single gene
DOOR ID:
2719809
CtCNB1_2972
View Structure
12
3380527-3380688
(+)
TPP
3380751-3381846 (+)
CtCNB1_2976
FAD dependent oxidoreductase
CtCNB1_2976
Single gene
DOOR ID:
2719813
CtCNB1_2976
View Structure
13
3583697-3583789
(+)
glycine
3583974-3584640 (+)
CtCNB1_3167
Putative membrane protein
CtCNB1_3167
Single gene
DOOR ID:
2719901
CtCNB1_3167
View Structure
14
3583803-3583922
(+)
glycine
3583974-3584640 (+)
CtCNB1_3167
Putative membrane protein
CtCNB1_3167
Single gene
DOOR ID:
2719901
CtCNB1_3167
View Structure
15
3676657-3676811
(+)
ZMP-ZTP
3676846-3678094 (+)
CtCNB1_3240
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
CtCNB1_3240
Operon
DOOR ID:
632994
CtCNB1_3240,
CtCNB1_3241
View Structure
16
3935612-3935729
(-)
TPP
3933408-3935382 (-)
CtCNB1_3480
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CtCNB1_3480
Single gene
DOOR ID:
2720054
CtCNB1_3480
View Structure
17
4077494-4077662
(-)
FMN
4076860-4077403 (-)
CtCNB1_3621
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
CtCNB1_3621
Single gene
DOOR ID:
2720115
CtCNB1_3621
View Structure
18
5274129-5274270
(-)
yybP-ykoY
5273480-5274092 (-)
CtCNB1_4718
Transmembrane protein PFT27
CtCNB1_4718
Single gene
DOOR ID:
2720631
CtCNB1_4718
View Structure
Genome:
Comamonas testosteroni CNB-2
(
NC_013446.2
);
Phylum:
Betaproteobacteria
a:19:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"140996-141105";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"141177-143901";i:10;s:1:"+";i:11;s:11:"CtCNB1_0126";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:11:"CtCNB1_0126";i:14;s:11:"Single gene";i:15;s:7:"2718549";i:16;s:11:"CtCNB1_0126";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"597104-597201";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"597276-598707";i:10;s:1:"+";i:11;s:11:"CtCNB1_0535";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:11:"CtCNB1_0535";i:14;s:11:"Single gene";i:15;s:7:"2718710";i:16;s:11:"CtCNB1_0535";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1075144-1075243";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1073703-1074972";i:10;s:1:"-";i:11;s:11:"CtCNB1_0952";i:12;s:28:"FAD dependent oxidoreductase";i:13;s:11:"CtCNB1_0952";i:14;s:6:"Operon";i:15;s:6:"632551";i:16;s:23:"CtCNB1_0951;CtCNB1_0952";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2085093-2085335";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2085576-2087280";i:10;s:1:"+";i:11;s:11:"CtCNB1_1842";i:12;s:23:"TonB-dependent receptor";i:13;s:11:"CtCNB1_1842";i:14;s:6:"Operon";i:15;s:6:"632727";i:16;s:23:"CtCNB1_1842;CtCNB1_1843";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2121094-2121334";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2119624-2120965";i:10;s:1:"-";i:11;s:11:"CtCNB1_1878";i:12;s:38:"Nitrite/sulfite reductase; hemoprotein";i:13;s:11:"CtCNB1_1878";i:14;s:6:"Operon";i:15;s:6:"632734";i:16;s:47:"CtCNB1_1875;CtCNB1_1876;CtCNB1_1877;CtCNB1_1878";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2134574-2134817";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2132285-2134451";i:10;s:1:"-";i:11;s:11:"CtCNB1_1887";i:12;s:35:"TonB-dependent siderophore receptor";i:13;s:11:"CtCNB1_1887";i:14;s:6:"Operon";i:15;s:6:"632736";i:16;s:71:"CtCNB1_1882;CtCNB1_1883;CtCNB1_1884;CtCNB1_1885;CtCNB1_1886;CtCNB1_1887";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2340358-2340449";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2340519-2341614";i:10;s:1:"+";i:11;s:11:"CtCNB1_2063";i:12;s:39:"Putative acyl protein synthase/acyl-CoA";i:13;s:11:"CtCNB1_2063";i:14;s:11:"Single gene";i:15;s:7:"2719354";i:16;s:11:"CtCNB1_2063";i:17;s:28:"bioluminescence [GO:0008218]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2478840-2478965";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2477638-2478775";i:10;s:1:"-";i:11;s:11:"CtCNB1_2173";i:12;s:33:"Glycine cleavage system T protein";i:13;s:11:"CtCNB1_2173";i:14;s:6:"Operon";i:15;s:6:"632796";i:16;s:35:"CtCNB1_2171;CtCNB1_2172;CtCNB1_2173";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2478985-2479095";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2477638-2478775";i:10;s:1:"-";i:11;s:11:"CtCNB1_2173";i:12;s:33:"Glycine cleavage system T protein";i:13;s:11:"CtCNB1_2173";i:14;s:6:"Operon";i:15;s:6:"632796";i:16;s:35:"CtCNB1_2171;CtCNB1_2172;CtCNB1_2173";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2841218-2841381";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2841447-2841957";i:10;s:1:"+";i:11;s:11:"CtCNB1_2477";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:11:"CtCNB1_2477";i:14;s:11:"Single gene";i:15;s:7:"2719556";i:16;s:11:"CtCNB1_2477";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3376588-3376721";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3376799-3378092";i:10;s:1:"+";i:11;s:11:"CtCNB1_2972";i:12;s:32:"Cytosine/purines/uracil permease";i:13;s:11:"CtCNB1_2972";i:14;s:11:"Single gene";i:15;s:7:"2719809";i:16;s:11:"CtCNB1_2972";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3380527-3380688";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3380751-3381846";i:10;s:1:"+";i:11;s:11:"CtCNB1_2976";i:12;s:28:"FAD dependent oxidoreductase";i:13;s:11:"CtCNB1_2976";i:14;s:11:"Single gene";i:15;s:7:"2719813";i:16;s:11:"CtCNB1_2976";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3583697-3583789";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3583974-3584640";i:10;s:1:"+";i:11;s:11:"CtCNB1_3167";i:12;s:25:"Putative membrane protein";i:13;s:11:"CtCNB1_3167";i:14;s:11:"Single gene";i:15;s:7:"2719901";i:16;s:11:"CtCNB1_3167";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3583803-3583922";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3583974-3584640";i:10;s:1:"+";i:11;s:11:"CtCNB1_3167";i:12;s:25:"Putative membrane protein";i:13;s:11:"CtCNB1_3167";i:14;s:11:"Single gene";i:15;s:7:"2719901";i:16;s:11:"CtCNB1_3167";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3676657-3676811";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3676846-3678094";i:10;s:1:"+";i:11;s:11:"CtCNB1_3240";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:11:"CtCNB1_3240";i:14;s:6:"Operon";i:15;s:6:"632994";i:16;s:23:"CtCNB1_3240;CtCNB1_3241";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3935612-3935729";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3933408-3935382";i:10;s:1:"-";i:11;s:11:"CtCNB1_3480";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"CtCNB1_3480";i:14;s:11:"Single gene";i:15;s:7:"2720054";i:16;s:11:"CtCNB1_3480";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4077494-4077662";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4076860-4077403";i:10;s:1:"-";i:11;s:11:"CtCNB1_3621";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:11:"CtCNB1_3621";i:14;s:11:"Single gene";i:15;s:7:"2720115";i:16;s:11:"CtCNB1_3621";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_013446.2";i:2;s:28:"Comamonas testosteroni CNB-2";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"5274129-5274270";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"5273480-5274092";i:10;s:1:"-";i:11;s:11:"CtCNB1_4718";i:12;s:27:"Transmembrane protein PFT27";i:13;s:11:"CtCNB1_4718";i:14;s:11:"Single gene";i:15;s:7:"2720631";i:16;s:11:"CtCNB1_4718";i:17;s:0:"";i:18;s:15:"View Structure ";}}
