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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
712368-712481
(-)
TPP
709801-710674 (-)
Gbro_0649
Phosphomethylpyrimidine kinase
Gbro_0649
Operon
DOOR ID:
631431
Gbro_0648,
Gbro_0649,
Gbro_0650
View Structure
2
1286864-1287046
(-)
ydaO-yuaA
1286221-1286857 (-)
Gbro_1231
Transglycosylase domain protein
Gbro_1231
Single gene
DOOR ID:
2717307
Gbro_1231
View Structure
3
1723205-1723355
(+)
cobalamin
1723394-1724429 (+)
Gbro_1651
Periplasmic binding protein
Gbro_1651
Operon
DOOR ID:
631640
Gbro_1651,
Gbro_1652,
Gbro_1653
View Structure
4
1839239-1839356
(-)
SAM-IV
1837850-1839176 (-)
Gbro_1761
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Gbro_1761
Operon
DOOR ID:
631667
Gbro_1760,
Gbro_1761
View Structure
5
1883137-1883210
(+)
cobalamin
1883216-1883507 (+)
Gbro_1803
Gbro_1803
Operon
DOOR ID:
631677
Gbro_1803,
Gbro_1804,
Gbro_1805
View Structure
6
2505001-2505159
(+)
FMN
2505204-2505852 (+)
Gbro_2354
Riboflavin synthase; alpha subunit
Gbro_2354
Operon
DOOR ID:
631810
Gbro_2354,
Gbro_2355,
Gbro_2356,
Gbro_2357,
Gbro_2358,
Gbro_2359,
Gbro_2360,
Gbro_2361,
Gbro_2362
View Structure
7
2617540-2617604
(-)
ykkC-III
2617214-2617529 (-)
Gbro_2448
Gbro_2448
single gene
DOOR ID:
2717661
Gbro_2448
View Structure
8
2957847-2957952
(-)
glycine
2954752-2957635 (-)
Gbro_2769
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Gbro_2769
Single gene
DOOR ID:
2717783
Gbro_2769
View Structure
9
3265707-3265918
(-)
ydaO-yuaA
3265006-3265690 (-)
Gbro_3050
NLP/P60 protein
Gbro_3050
Single gene
DOOR ID:
2717868
Gbro_3050
View Structure
10
3683245-3683321
(-)
fluoride
3682736-3683225 (-)
Gbro_3466
Putative fluoride ion transporter CrcB
Gbro_3466
Operon
DOOR ID:
632047
Gbro_3464,
Gbro_3465,
Gbro_3466
View Structure
11
4695324-4695428
(-)
TPP
4694044-4694242 (-)
Gbro_4389
Thiamine biosynthesis protein ThiS
Gbro_4389
Operon
DOOR ID:
632255
Gbro_4386,
Gbro_4387,
Gbro_4388,
Gbro_4389,
Gbro_4390
View Structure
12
4924047-4924144
(+)
TPP
4925013-4926666 (-)
Gbro_4595
Carboxylesterase type B
Gbro_4595
Operon
DOOR ID:
632294
Gbro_4595,
Gbro_4596
View Structure
Genome:
Gordonia bronchialis DSM 43247
(
NC_013441.1
);
Phylum:
Actinobacteria
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alpha subunit ";i:13;s:9:"Gbro_2354";i:14;s:6:"Operon";i:15;s:6:"631810";i:16;s:89:"Gbro_2354;Gbro_2355;Gbro_2356;Gbro_2357;Gbro_2358;Gbro_2359;Gbro_2360;Gbro_2361;Gbro_2362";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013441.1";i:2;s:31:"Gordonia bronchialis DSM 43247 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2617540-2617604";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"2617214-2617529";i:10;s:1:"-";i:11;s:9:"Gbro_2448";i:12;s:0:"";i:13;s:9:"Gbro_2448";i:14;s:11:"single gene";i:15;s:7:"2717661";i:16;s:9:"Gbro_2448";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013441.1";i:2;s:31:"Gordonia bronchialis DSM 43247 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2957847-2957952";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2954752-2957635";i:10;s:1:"-";i:11;s:9:"Gbro_2769";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Gbro_2769";i:14;s:11:"Single gene";i:15;s:7:"2717783";i:16;s:9:"Gbro_2769";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013441.1";i:2;s:31:"Gordonia bronchialis DSM 43247 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3265707-3265918";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3265006-3265690";i:10;s:1:"-";i:11;s:9:"Gbro_3050";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Gbro_3050";i:14;s:11:"Single gene";i:15;s:7:"2717868";i:16;s:9:"Gbro_3050";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013441.1";i:2;s:31:"Gordonia bronchialis DSM 43247 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3683245-3683321";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3682736-3683225";i:10;s:1:"-";i:11;s:9:"Gbro_3466";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"Gbro_3466";i:14;s:6:"Operon";i:15;s:6:"632047";i:16;s:29:"Gbro_3464;Gbro_3465;Gbro_3466";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013441.1";i:2;s:31:"Gordonia bronchialis DSM 43247 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4695324-4695428";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4694044-4694242";i:10;s:1:"-";i:11;s:9:"Gbro_4389";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"Gbro_4389";i:14;s:6:"Operon";i:15;s:6:"632255";i:16;s:49:"Gbro_4386;Gbro_4387;Gbro_4388;Gbro_4389;Gbro_4390";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013441.1";i:2;s:31:"Gordonia bronchialis DSM 43247 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4924047-4924144";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4925013-4926666";i:10;s:1:"-";i:11;s:9:"Gbro_4595";i:12;s:23:"Carboxylesterase type B";i:13;s:9:"Gbro_4595";i:14;s:6:"Operon";i:15;s:6:"632294";i:16;s:19:"Gbro_4595;Gbro_4596";i:17;s:0:"";i:18;s:15:"View Structure ";}}